View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21296_low_4 (Length: 370)
Name: NF21296_low_4
Description: NF21296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21296_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 13 - 355
Target Start/End: Complemental strand, 30899756 - 30899414
Alignment:
| Q |
13 |
aaaatgaaataaaggttaaaggtaagataagacaaatgagagacataaaggtagtgcatatgtttattttatggtgtcttaaaaataaaataaaggtaga |
112 |
Q |
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| T |
30899756 |
aaaatgaaataaaggttaaaggtaagataagacaaatgagagacataaaggtagtgcatatgtttattttatggtgtcttaaaaataaaataaaggtaga |
30899657 |
T |
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| Q |
113 |
gatgctatttagctacatggcccctttatcctaattccaattcccacatactttaaatctttatcaatggaaggactatataagagttcccacaccgttg |
212 |
Q |
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| T |
30899656 |
gatgctatttagctacatggtccctttatcctaattcccattcccacatactttaaatctttatcaatggaaggactatataagagttcccacaccgttg |
30899557 |
T |
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| Q |
213 |
attcttataattaaatacaattgatggcatcttctactcttagcctttgttttaagtaggataatgttgtgtggccccacccaccatttatcttactagg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30899556 |
attcttataattaaatacaattgatggcatcttctactcttagcctttgttttaagtaggataatgttgtgtggtcccacccaccatttatcttactagg |
30899457 |
T |
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| Q |
313 |
ttatcttttattcttctctcatgctagcttttagtgttaataa |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30899456 |
ttatcttttattcttctctcatgctagcttttagtgttaataa |
30899414 |
T |
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