View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21296_low_5 (Length: 335)
Name: NF21296_low_5
Description: NF21296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21296_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 4836043 - 4835726
Alignment:
| Q |
1 |
tagatctcaattcttctatgatctttgttgctctcgttaattgttttgtgattctagaagaaaatgagcgaataattgaggggttttaaataaaggtttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4836043 |
tagatctcaattcttctatgatctttgttgctctcgttaattgttttgtgattctagaagaaaatgagcgaataattgaggggttttaaataaaggtttg |
4835944 |
T |
|
| Q |
101 |
tgaccgcgtgacataacggtttttgattttgttgaaaccatcatgcgattgcggacgaggcagcatcggctgcattttgatcgcctttctccacaatatt |
200 |
Q |
| |
|
|||| |||||| |||||| |||||||||| ||||||| ||||||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4835943 |
tgactgcgtgatataacgatttttgatttagttgaaatcatcatgtgattgcagacaaggcagcatcggctgcattttgatcgcctttctccacaatatt |
4835844 |
T |
|
| Q |
201 |
aagaatcaaaacctgaccaaaacttcactctatgttatttaaaactatcatgatcaacttcctatctatgagcccgatcttgatgaatgatgatgtagta |
300 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4835843 |
aagaatcaaaacctaaccaaaacttcactctgtgttatttaaaactatcatgatcaacttcctatctatgagcccgatcttgatgaatgatgatgtagta |
4835744 |
T |
|
| Q |
301 |
aagcaatgtcgcagaaag |
318 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4835743 |
aagcaatgtcgcagaaag |
4835726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 96
Target Start/End: Complemental strand, 4846444 - 4846386
Alignment:
| Q |
38 |
taattgttttgtgattctagaagaaaatgagcgaataattgaggggttttaaataaagg |
96 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||| ||||| |||||||||||||||| |
|
|
| T |
4846444 |
taattgttttgtgattctagaagaagatgagcaaattattgaagggttttaaataaagg |
4846386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 4798525 - 4798468
Alignment:
| Q |
1 |
tagatctcaattcttctatgatctttgttgctctcgttaattgttttgtgattctaga |
58 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||| | |||||||||| |||||||||| |
|
|
| T |
4798525 |
tagatctgaattcttctatgatctttgtttctctgggtaattgttttttgattctaga |
4798468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 4817720 - 4817663
Alignment:
| Q |
1 |
tagatctcaattcttctatgatctttgttgctctcgttaattgttttgtgattctaga |
58 |
Q |
| |
|
||||||| ||||| ||||||||||||||| |||| | ||||||||||||||||||||| |
|
|
| T |
4817720 |
tagatctgaattcatctatgatctttgtttctctgggtaattgttttgtgattctaga |
4817663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University