View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21296_low_8 (Length: 237)

Name: NF21296_low_8
Description: NF21296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21296_low_8
NF21296_low_8
[»] chr4 (11 HSPs)
chr4 (29-191)||(38995534-38995686)
chr4 (70-143)||(21216351-21216425)
chr4 (183-222)||(38995796-38995835)
chr4 (67-102)||(38345725-38345760)
chr4 (72-102)||(23297402-23297432)
chr4 (112-154)||(28074397-28074438)
chr4 (157-191)||(28074488-28074522)
chr4 (72-102)||(29877603-29877633)
chr4 (113-154)||(35124420-35124461)
chr4 (74-102)||(17222978-17223006)
chr4 (112-156)||(29997320-29997364)
[»] chr1 (10 HSPs)
chr1 (112-154)||(37329424-37329466)
chr1 (67-102)||(45267438-45267473)
chr1 (112-154)||(3069866-3069908)
chr1 (112-154)||(6337768-6337810)
chr1 (112-154)||(15515359-15515401)
chr1 (112-154)||(23544823-23544865)
chr1 (112-154)||(26988180-26988222)
chr1 (112-154)||(28690036-28690078)
chr1 (112-154)||(48819331-48819373)
chr1 (73-102)||(47413521-47413550)
[»] chr5 (9 HSPs)
chr5 (69-102)||(28970170-28970203)
chr5 (112-154)||(28625512-28625554)
chr5 (112-154)||(40452490-40452532)
chr5 (72-102)||(41125668-41125698)
chr5 (112-154)||(41419533-41419575)
chr5 (69-102)||(40452381-40452414)
chr5 (73-102)||(40697155-40697184)
chr5 (112-148)||(12467296-12467332)
chr5 (157-185)||(40697130-40697158)
[»] chr7 (7 HSPs)
chr7 (72-102)||(40629340-40629370)
chr7 (72-102)||(40629508-40629538)
chr7 (69-102)||(29378620-29378653)
chr7 (73-102)||(47511022-47511051)
chr7 (74-102)||(33287984-33288012)
chr7 (157-185)||(39279554-39279582)
chr7 (157-185)||(41037847-41037875)
[»] chr3 (1 HSPs)
chr3 (112-154)||(43079946-43079988)
[»] chr2 (8 HSPs)
chr2 (69-99)||(5903767-5903797)
chr2 (72-102)||(13097880-13097910)
chr2 (112-154)||(33321324-33321366)
chr2 (112-154)||(36501527-36501569)
chr2 (112-154)||(39592281-39592323)
chr2 (71-99)||(5903690-5903718)
chr2 (72-100)||(36501422-36501450)
chr2 (157-185)||(38010604-38010632)
[»] chr8 (1 HSPs)
chr8 (114-154)||(10298938-10298978)


Alignment Details
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 29 - 191
Target Start/End: Original strand, 38995534 - 38995686
Alignment:
Q  29 ctcgctaatattgcatcactcattttctatttaaaatattggacctgtttggattggcttatttttgagcttatttttactttttattcataaacttgtc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||| |||||    
T  38995534 ctcgctaatattgcatcactcattttctatttaaaatattggacctgtttggattggcttatttttgagctt----------tttattcataaaattgtc 38995623  T
Q  129 aaggtagtttatgaacaaaaagcttacatatttatttgtataagctatttttcataaactaaa 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38995624 aaggtagtttatgaacaaaaagcttacatatttatttgtataagctatttttcataaactaaa 38995686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 143
Target Start/End: Complemental strand, 21216425 - 21216351
Alignment:
Q  70 gacctgtttggattggcttatttttgagcttat-ttttactttttattcataaacttgtcaaggtagtttatgaa 143  Q
    |||| |||||||||| ||||||||| ||||||| |||||  | |||||||||| |||||||||||||||||||||    
T  21216425 gacccgtttggattgacttattttttagcttatgttttatgtattattcataagcttgtcaaggtagtttatgaa 21216351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 222
Target Start/End: Original strand, 38995796 - 38995835
Alignment:
Q  183 taaactaaagagataatacccatggcgttgttgttgatag 222  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  38995796 taaactaaagagataatacccatggggttgttgttgatag 38995835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 102
Target Start/End: Original strand, 38345725 - 38345760
Alignment:
Q  67 ttggacctgtttggattggcttatttttgagcttat 102  Q
    ||||||| ||||||||||||||||||||||||||||    
T  38345725 ttggacccgtttggattggcttatttttgagcttat 38345760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 102
Target Start/End: Original strand, 23297402 - 23297432
Alignment:
Q  72 cctgtttggattggcttatttttgagcttat 102  Q
    |||||||||||||||||||||||||||||||    
T  23297402 cctgtttggattggcttatttttgagcttat 23297432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 28074397 - 28074438
Alignment:
Q  112 ttattcataaacttgtcaaggtagtttatgaacaaaaagctta 154  Q
    |||||||||| ||||||||||||||||||||| ||||||||||    
T  28074397 ttattcataagcttgtcaaggtagtttatgaa-aaaaagctta 28074438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 191
Target Start/End: Original strand, 28074488 - 28074522
Alignment:
Q  157 tatttatttgtataagctatttttcataaactaaa 191  Q
    |||||||||| ||||||||||||||||||||||||    
T  28074488 tatttatttgcataagctatttttcataaactaaa 28074522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 102
Target Start/End: Original strand, 29877603 - 29877633
Alignment:
Q  72 cctgtttggattggcttatttttgagcttat 102  Q
    |||||||||||||||||||||||||||||||    
T  29877603 cctgtttggattggcttatttttgagcttat 29877633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 154
Target Start/End: Original strand, 35124420 - 35124461
Alignment:
Q  113 tattcataaacttgtcaaggtagtttatgaacaaaaagctta 154  Q
    ||||||||| ||||||||||||||||||||| ||| ||||||    
T  35124420 tattcataagcttgtcaaggtagtttatgaaaaaacagctta 35124461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 102
Target Start/End: Complemental strand, 17223006 - 17222978
Alignment:
Q  74 tgtttggattggcttatttttgagcttat 102  Q
    |||||||||||||||||||||||||||||    
T  17223006 tgtttggattggcttatttttgagcttat 17222978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 29997364 - 29997320
Alignment:
Q  112 ttattcataaacttgtcaaggtagtttatgaacaaaaagcttaca 156  Q
    |||||||||| ||| ||||||||||||||||| ||||| ||||||    
T  29997364 ttattcataagcttatcaaggtagtttatgaaaaaaaatcttaca 29997320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 37329466 - 37329424
Alignment:
Q  112 ttattcataaacttgtcaaggtagtttatgaacaaaaagctta 154  Q
    |||||||||||||||||||||||||||||||| ||| ||||||    
T  37329466 ttattcataaacttgtcaaggtagtttatgaaaaaacagctta 37329424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 102
Target Start/End: Original strand, 45267438 - 45267473
Alignment:
Q  67 ttggacctgtttggattggcttatttttgagcttat 102  Q
    |||||||||||||||||| |||||||||||||||||    
T  45267438 ttggacctgtttggattgacttatttttgagcttat 45267473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 3069908 - 3069866
Alignment:
Q  112 ttattcataaacttgtcaaggtagtttatgaacaaaaagctta 154  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||    
T  3069908 ttattcataagcttgtcaaggtagtttatgaaaaaacagctta 3069866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 6337810 - 6337768
Alignment:
Q  112 ttattcataaacttgtcaaggtagtttatgaacaaaaagctta 154  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||    
T  6337810 ttattcataagcttgtcaaggtagtttatgaaaaaacagctta 6337768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 15515401 - 15515359
Alignment:
Q  112 ttattcataaacttgtcaaggtagtttatgaacaaaaagctta 154  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||    
T  15515401 ttattcataagcttgtcaaggtagtttatgaaaaaagagctta 15515359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 23544823 - 23544865
Alignment:
Q  112 ttattcataaacttgtcaaggtagtttatgaacaaaaagctta 154  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||    
T  23544823 ttattcataagcttgtcaaggtagtttatgaaaaaacagctta 23544865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 26988180 - 26988222
Alignment:
Q  112 ttattcataaacttgtcaaggtagtttatgaacaaaaagctta 154  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||    
T  26988180 ttattcataagcttgtcaaggtagtttatgaaaaaacagctta 26988222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 28690036 - 28690078
Alignment:
Q  112 ttattcataaacttgtcaaggtagtttatgaacaaaaagctta 154  Q
    ||||||||||  |||||||||||||||||||||||| ||||||    
T  28690036 ttattcataagtttgtcaaggtagtttatgaacaaacagctta 28690078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 48819331 - 48819373
Alignment:
Q  112 ttattcataaacttgtcaaggtagtttatgaacaaaaagctta 154  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||    
T  48819331 ttattcataagcttgtcaaggtagtttatgaaaaaacagctta 48819373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 102
Target Start/End: Complemental strand, 47413550 - 47413521
Alignment:
Q  73 ctgtttggattggcttatttttgagcttat 102  Q
    ||||||||||||||||||||||||||||||    
T  47413550 ctgtttggattggcttatttttgagcttat 47413521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 102
Target Start/End: Complemental strand, 28970203 - 28970170
Alignment:
Q  69 ggacctgtttggattggcttatttttgagcttat 102  Q
    ||||||||||||||||||||||||||||||||||    
T  28970203 ggacctgtttggattggcttatttttgagcttat 28970170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 28625512 - 28625554
Alignment:
Q  112 ttattcataaacttgtcaaggtagtttatgaacaaaaagctta 154  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||    
T  28625512 ttattcataagcttgtcaaggtagtttatgaaaaaacagctta 28625554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 40452532 - 40452490
Alignment:
Q  112 ttattcataaacttgtcaaggtagtttatgaacaaaaagctta 154  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||    
T  40452532 ttattcataagcttgtcaaggtagtttatgaagaaacagctta 40452490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 102
Target Start/End: Original strand, 41125668 - 41125698
Alignment:
Q  72 cctgtttggattggcttatttttgagcttat 102  Q
    |||||||||||||||||||||||||||||||    
T  41125668 cctgtttggattggcttatttttgagcttat 41125698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 41419533 - 41419575
Alignment:
Q  112 ttattcataaacttgtcaaggtagtttatgaacaaaaagctta 154  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||    
T  41419533 ttattcataagcttgtcaaggtagtttatgaaaaaacagctta 41419575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 40452381 - 40452414
Alignment:
Q  69 ggacctgtttggattggcttatttttgagcttat 102  Q
    |||||| |||||||||||||||||||||||||||    
T  40452381 ggacctctttggattggcttatttttgagcttat 40452414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 102
Target Start/End: Complemental strand, 40697184 - 40697155
Alignment:
Q  73 ctgtttggattggcttatttttgagcttat 102  Q
    ||||||||||||||||||||||||||||||    
T  40697184 ctgtttggattggcttatttttgagcttat 40697155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 12467296 - 12467332
Alignment:
Q  112 ttattcataaacttgtcaaggtagtttatgaacaaaa 148  Q
    |||||||||| ||||||||||||||||||||| ||||    
T  12467296 ttattcataagcttgtcaaggtagtttatgaaaaaaa 12467332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 40697130 - 40697158
Alignment:
Q  157 tatttatttgtataagctatttttcataa 185  Q
    |||||||||||||||||||||||||||||    
T  40697130 tatttatttgtataagctatttttcataa 40697158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 102
Target Start/End: Original strand, 40629340 - 40629370
Alignment:
Q  72 cctgtttggattggcttatttttgagcttat 102  Q
    |||||||||||||||||||||||||||||||    
T  40629340 cctgtttggattggcttatttttgagcttat 40629370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 102
Target Start/End: Complemental strand, 40629538 - 40629508
Alignment:
Q  72 cctgtttggattggcttatttttgagcttat 102  Q
    |||||||||||||||||||||||||||||||    
T  40629538 cctgtttggattggcttatttttgagcttat 40629508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 102
Target Start/End: Original strand, 29378620 - 29378653
Alignment:
Q  69 ggacctgtttggattggcttatttttgagcttat 102  Q
    |||||||||||||||||||||| |||||||||||    
T  29378620 ggacctgtttggattggcttatctttgagcttat 29378653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 102
Target Start/End: Original strand, 47511022 - 47511051
Alignment:
Q  73 ctgtttggattggcttatttttgagcttat 102  Q
    ||||||||||||||||||||||||||||||    
T  47511022 ctgtttggattggcttatttttgagcttat 47511051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 102
Target Start/End: Original strand, 33287984 - 33288012
Alignment:
Q  74 tgtttggattggcttatttttgagcttat 102  Q
    |||||||||||||||||||||||||||||    
T  33287984 tgtttggattggcttatttttgagcttat 33288012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 39279554 - 39279582
Alignment:
Q  157 tatttatttgtataagctatttttcataa 185  Q
    |||||||||||||||||||||||||||||    
T  39279554 tatttatttgtataagctatttttcataa 39279582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 41037847 - 41037875
Alignment:
Q  157 tatttatttgtataagctatttttcataa 185  Q
    |||||||||||||||||||||||||||||    
T  41037847 tatttatttgtataagctatttttcataa 41037875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 43079988 - 43079946
Alignment:
Q  112 ttattcataaacttgtcaaggtagtttatgaacaaaaagctta 154  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||    
T  43079988 ttattcataagcttgtcaaggtagtttatgaaaaaacagctta 43079946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 99
Target Start/End: Complemental strand, 5903797 - 5903767
Alignment:
Q  69 ggacctgtttggattggcttatttttgagct 99  Q
    |||||||||||||||||||||||||||||||    
T  5903797 ggacctgtttggattggcttatttttgagct 5903767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 102
Target Start/End: Original strand, 13097880 - 13097910
Alignment:
Q  72 cctgtttggattggcttatttttgagcttat 102  Q
    |||||||||||||||||||||||||||||||    
T  13097880 cctgtttggattggcttatttttgagcttat 13097910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 33321366 - 33321324
Alignment:
Q  112 ttattcataaacttgtcaaggtagtttatgaacaaaaagctta 154  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||    
T  33321366 ttattcataagcttgtcaaggtagtttatgaaaaaacagctta 33321324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 36501569 - 36501527
Alignment:
Q  112 ttattcataaacttgtcaaggtagtttatgaacaaaaagctta 154  Q
    |||||||||| ||||||||||||||||||||| ||| ||||||    
T  36501569 ttattcataagcttgtcaaggtagtttatgaaaaaacagctta 36501527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 39592281 - 39592323
Alignment:
Q  112 ttattcataaacttgtcaaggtagtttatgaacaaaaagctta 154  Q
    |||||||||| ||||||||||||||||||||| | ||||||||    
T  39592281 ttattcataagcttgtcaaggtagtttatgaaaataaagctta 39592323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 99
Target Start/End: Complemental strand, 5903718 - 5903690
Alignment:
Q  71 acctgtttggattggcttatttttgagct 99  Q
    |||||||||||||||||||||||||||||    
T  5903718 acctgtttggattggcttatttttgagct 5903690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 100
Target Start/End: Original strand, 36501422 - 36501450
Alignment:
Q  72 cctgtttggattggcttatttttgagctt 100  Q
    |||||||||||||||||||||||||||||    
T  36501422 cctgtttggattggcttatttttgagctt 36501450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 185
Target Start/End: Complemental strand, 38010632 - 38010604
Alignment:
Q  157 tatttatttgtataagctatttttcataa 185  Q
    |||||||||||||||||||||||||||||    
T  38010632 tatttatttgtataagctatttttcataa 38010604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 10298978 - 10298938
Alignment:
Q  114 attcataaacttgtcaaggtagtttatgaacaaaaagctta 154  Q
    |||||||| ||||||||||||||||||||| ||| ||||||    
T  10298978 attcataagcttgtcaaggtagtttatgaaaaaacagctta 10298938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University