View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21297_high_1 (Length: 761)
Name: NF21297_high_1
Description: NF21297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21297_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 125 - 447
Target Start/End: Original strand, 2637607 - 2637927
Alignment:
| Q |
125 |
gtgagatgccacagaggtcaaacataagttgggtggttggaataatcaaccttttgcttacttgtatttgatttcgatttctcttttgtatatatcacta |
224 |
Q |
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| T |
2637607 |
gtgagatgccacagaggtcaaacataagttgggtggttggaataatcaaccttttgcttacttgtatttgatttcgatttctcttttgtatatatcacta |
2637706 |
T |
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| Q |
225 |
gttttgatctattcaatgtatataaccatgtataatgctccaatatcatgtaaactttttctgcttaaataacattttactgtcagctagtgagctttag |
324 |
Q |
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| T |
2637707 |
gttttgatctattcaatgtatataaccatgtataatgctccaatatcatgtaaactttttctgcttaaataacattttactgccagctagtgagctttag |
2637806 |
T |
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| Q |
325 |
nnnnnnntattttgaagtttcaattaaaaaactaagtaatttttcaaagtttatgggacccttcattagagtgtaacatgttgttcacgtaaacttaact |
424 |
Q |
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| T |
2637807 |
aaaaaaata--ttgaagtttcaattaaaaaactaagtaattttttaaagtttctgggacccttcattagagtgtaacatgttgtacacgtaaacttaact |
2637904 |
T |
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| Q |
425 |
cgattggtaagaataatgaataa |
447 |
Q |
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| T |
2637905 |
cggttggtaacgataatgaataa |
2637927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 515 - 761
Target Start/End: Original strand, 2638027 - 2638274
Alignment:
| Q |
515 |
tggttcggtttcatttcatgcgaaattggtgattttgcctaaa-ctaacacaatgaacaaatagattgattatgatttggtttgttcatattataaaaaa |
613 |
Q |
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| T |
2638027 |
tggttcggtttcatttcatacgaaattgatgattttgcctaaaactaacacaatgaaaaaatagattgattatggtttggtttgttcatattataaaaaa |
2638126 |
T |
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| Q |
614 |
gtgagaaattgcaacaacaacaaaaaagttataaacgtgtgcctctgccctccgctacctgcttcaatttatttgataatgaatcaattagaactcaagg |
713 |
Q |
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| T |
2638127 |
gtgagaaattgcaacaacaa-aaaaaagttataaacgtgtgcctctgccctctgctacctgcttcaatttatttgataatgaatcaattaaaactcaagg |
2638225 |
T |
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| Q |
714 |
aaaac-aaaaaatttgttaatgaattaagcaaaggacaaatcgatgaac |
761 |
Q |
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| T |
2638226 |
aaaacaaaaaaaattattaatgaattaagcaaaggacagatcgatgaac |
2638274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 2637481 - 2637527
Alignment:
| Q |
19 |
agtgtaaaaatatcattgtgttgactacgaatttacttttgtgagcc |
65 |
Q |
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| T |
2637481 |
agtgtaacaatatcattgtgttgactaagaatttacttttgtgagcc |
2637527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 92 - 126
Target Start/End: Original strand, 2637559 - 2637593
Alignment:
| Q |
92 |
aatctttttcaattcactgaataaagtcatcatgt |
126 |
Q |
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| T |
2637559 |
aatctttttcaattcactgaataaagtcatcatgt |
2637593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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