View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21297_high_10 (Length: 332)
Name: NF21297_high_10
Description: NF21297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21297_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 6e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 12 - 239
Target Start/End: Original strand, 45635211 - 45635449
Alignment:
| Q |
12 |
acagactactaaggaaaccatgagattgtaatacgagtttgctttt-atattattgcaagcaa---------ccatttttccatctattctttaaatatc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45635211 |
acagactactaaggaaaccatgagattgtaatacgagtttgctttttatattattgcaagcaaggttaacccccatttttccatctattctttaaatatc |
45635310 |
T |
|
| Q |
102 |
acgttggacatactttaataggaactataaaa-aatgtaatgtcaactgagaatgcgtaaagaaattaaatatatcttgtttgagatcacatgggtgatt |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
45635311 |
acgttggacatactttaataggaactataaaaaaatgtaatgtcaactgagaatgcgtaaagaaattaaatatatcttgtttgtgttcacatgggtgatt |
45635410 |
T |
|
| Q |
201 |
gtcaagctaacaaggttaaatatcaacttttaattttaa |
239 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
45635411 |
gtcaagctaacaaggttaaatatcaacttttaattttaa |
45635449 |
T |
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