View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21297_high_20 (Length: 257)
Name: NF21297_high_20
Description: NF21297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21297_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 25957168 - 25957392
Alignment:
| Q |
18 |
atgctggacaagcagaagggatgacgttttgggcaccaaacataaacatatttcgggatccaagatggggaagagggcaagaaacagctggtgaagatcc |
117 |
Q |
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|||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |
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| T |
25957168 |
atgctggacaagcagaggggatgacattttgggcaccaaacataaacatatttagggacccaagatggggaagagggcaagagacagctggtgaagatcc |
25957267 |
T |
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| Q |
118 |
tttggtaagtgcaaagtatgctatttcctttgtgagaggtcttcaaggtgattcctttgaaggtgggaaacttaatgaagatcgtcttaaagcttctgct |
217 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25957268 |
tttggtaagtgcaaagtatgctgtttcctttgtgagaggtcttcaaggtgattcctttgaaggtgggaaacttaatgaagatcgtcttaaagcttctgct |
25957367 |
T |
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| Q |
218 |
tgttgtaaacactttactgcctatg |
242 |
Q |
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||||||||||||||||||||||||| |
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| T |
25957368 |
tgttgtaaacactttactgcctatg |
25957392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 25888007 - 25887783
Alignment:
| Q |
18 |
atgctggacaagcagaagggatgacgttttgggcaccaaacataaacatatttcgggatccaagatggggaagagggcaagaaacagctggtgaagatcc |
117 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25888007 |
atgctggacaagctcaagggatgacgttttgggcaccaaacataaacatatttagggacccaagatggggaagaggacaagaaacagctggtgaagatcc |
25887908 |
T |
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| Q |
118 |
tttggtaagtgcaaagtatgctatttcctttgtgagaggtcttcaaggtgattcctttgaaggtgggaaacttaatgaagatcgtcttaaagcttctgct |
217 |
Q |
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|||||||| | ||||||||| | |||||| ||||||||| |||||||||||||||||||||||||||||||| | || || ||||||||||||||||||| |
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| T |
25887907 |
tttggtaaattcaaagtatggtgtttcctatgtgagaggacttcaaggtgattcctttgaaggtgggaaactgattggaggtcgtcttaaagcttctgct |
25887808 |
T |
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| Q |
218 |
tgttgtaaacactttactgcctatg |
242 |
Q |
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||||| ||||||||||||||||||| |
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| T |
25887807 |
tgttgcaaacactttactgcctatg |
25887783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 25910614 - 25910390
Alignment:
| Q |
18 |
atgctggacaagcagaagggatgacgttttgggcaccaaacataaacatatttcgggatccaagatggggaagagggcaagaaacagctggtgaagatcc |
117 |
Q |
| |
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||||||||||||| ||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25910614 |
atgctggacaagcccaagggatgaatttttgggcaccaaacataaacatattcagggacccaagatggggaagaggacaagaaacagctggtgaagatcc |
25910515 |
T |
|
| Q |
118 |
tttggtaagtgcaaagtatgctatttcctttgtgagaggtcttcaaggtgattcctttgaaggtgggaaacttaatgaagatcgtcttaaagcttctgct |
217 |
Q |
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|||||||| | ||||||||| | |||||| ||||||||| |||||||||||||||||||||||||||||||| | || || ||||||||||||||||||| |
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| T |
25910514 |
tttggtaaattcaaagtatggtgtttcctatgtgagaggacttcaaggtgattcctttgaaggtgggaaactgattggaggtcgtcttaaagcttctgct |
25910415 |
T |
|
| Q |
218 |
tgttgtaaacactttactgcctatg |
242 |
Q |
| |
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||||| ||||||||||||||||||| |
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| T |
25910414 |
tgttgcaaacactttactgcctatg |
25910390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 25928453 - 25928229
Alignment:
| Q |
18 |
atgctggacaagcagaagggatgacgttttgggcaccaaacataaacatatttcgggatccaagatggggaagagggcaagaaacagctggtgaagatcc |
117 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
25928453 |
atgctggacaagctcaagggatgacgttttgggcaccaaacataaacatatttagggacccaagatggggaagaggacaagaaacagctggtgaagatcc |
25928354 |
T |
|
| Q |
118 |
tttggtaagtgcaaagtatgctatttcctttgtgagaggtcttcaaggtgattcctttgaaggtgggaaacttaatgaagatcgtcttaaagcttctgct |
217 |
Q |
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|||||| | | ||||||||| | |||||| ||| ||||| |||||||| ||||||||||||||||| ||||| | || |||||||||||||||||||||| |
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| T |
25928353 |
tttggtgaattcaaagtatggtgtttcctatgtaagaggacttcaaggagattcctttgaaggtggaaaactgattggagatcgtcttaaagcttctgct |
25928254 |
T |
|
| Q |
218 |
tgttgtaaacactttactgcctatg |
242 |
Q |
| |
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||||| ||||| ||||||||||||| |
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| T |
25928253 |
tgttgcaaacattttactgcctatg |
25928229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 35 - 180
Target Start/End: Complemental strand, 33423731 - 33423586
Alignment:
| Q |
35 |
gggatgacgttttgggcaccaaacataaacatatttcgggatccaagatggggaagagggcaagaaacagctggtgaagatcctttggtaagtgcaaagt |
134 |
Q |
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|
|||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||| || | | | | || | |
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| T |
33423731 |
gggatgacattttgggcaccaaacataaacatattcagggatccaagatgggggagaggacaagaaacagctggtgaagatcctatgatgacttctaact |
33423632 |
T |
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| Q |
135 |
atgctatttcctttgtgagaggtcttcaaggtgattcctttgaagg |
180 |
Q |
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||||| |||||| ||| ||||| |||||||||||||| ||| |||| |
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| T |
33423631 |
atgctgtttcctatgttagaggacttcaaggtgattcttttcaagg |
33423586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 37610214 - 37610288
Alignment:
| Q |
46 |
ttgggcaccaaacataaacatatttcgggatccaagatggggaagagggcaagaaacagctggtgaagatccttt |
120 |
Q |
| |
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|||| |||||||||| ||||||||| |||||||||||||||||||||| ||||||||| | || ||||| ||||| |
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| T |
37610214 |
ttggtcaccaaacattaacatatttagggatccaagatggggaagaggtcaagaaacaccaggagaagacccttt |
37610288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 127
Target Start/End: Complemental strand, 1370267 - 1370186
Alignment:
| Q |
46 |
ttgggcaccaaacataaacatatttcgggatccaagatggggaagagggcaagaaacagctggtgaagatcctttggtaagt |
127 |
Q |
| |
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|||| |||||||||| |||||||| | ||||||||||||||||| || ||||||||| | |||||||| |||||| ||||| |
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| T |
1370267 |
ttggtcaccaaacattaacatattcagagatccaagatggggaaggggacaagaaacaccaggtgaagaccctttgttaagt |
1370186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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