View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21297_high_22 (Length: 249)
Name: NF21297_high_22
Description: NF21297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21297_high_22 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 7401966 - 7402083
Alignment:
| Q |
1 |
tgacattccaattggtcattttgtttatgtagctcctattgaggtaacaaatattgaagtgtcactaaatgtggataaaaaaggaaatgaaaatgaatgt |
100 |
Q |
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| T |
7401966 |
tgacattccaattggtcattttgtttatgtagctcctattgaggtaacaaatattgaagtgtcactaaatgtggataaaaaaggaaatgaaaatgaacgt |
7402065 |
T |
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| Q |
101 |
gatgagaatgagatcaac |
118 |
Q |
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| T |
7402066 |
gatgagaatgagatcaac |
7402083 |
T |
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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 238
Target Start/End: Original strand, 7402146 - 7402203
Alignment:
| Q |
181 |
tcaacgtagaagtcgtagcaatcgacgacgtgttaaaccattgatgaagtctcgttct |
238 |
Q |
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|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7402146 |
tcaacgtaaaagtcgtagcgatcgacgacgtgttaaaccattgatgaagtctcgttct |
7402203 |
T |
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