View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21297_high_26 (Length: 238)
Name: NF21297_high_26
Description: NF21297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21297_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 29092702 - 29092806
Alignment:
| Q |
18 |
agtaatgccagcaaagaatcacaaatttttcttgtaaagttagagagaaataacatggtaatgagaagcactgatcatgagagcagatcaagaaccaatg |
117 |
Q |
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| T |
29092702 |
agtaatgccagcaaagaatcacaaatttttcttgtaaagttagagagaaataacatggtaatgagaagcactgatcatgagagcagatcaagaaccaatg |
29092801 |
T |
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| Q |
118 |
acttg |
122 |
Q |
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||||| |
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| T |
29092802 |
acttg |
29092806 |
T |
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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 156 - 224
Target Start/End: Original strand, 29092803 - 29092871
Alignment:
| Q |
156 |
cttgtaaatactccaatnnnnnnnctttggaataaattaacaaaatagtaagttatttgcagtataatc |
224 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
29092803 |
cttgtaaatactccaataaaaaaactttggaataaattaacaaaatagaaagttatttgcagtgtaatc |
29092871 |
T |
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