View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21297_high_29 (Length: 220)
Name: NF21297_high_29
Description: NF21297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21297_high_29 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 1350494 - 1350703
Alignment:
| Q |
11 |
cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagactgaggtctagttttaatttattttcaat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1350494 |
cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagaccgaggtctagttttaatttattttcaat |
1350593 |
T |
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| Q |
111 |
gccttttcaacgaacatatatatagttttgaacttagatggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaacca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1350594 |
gccttttcaacgaacatatatatagttttgaacttagatggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaacca |
1350693 |
T |
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| Q |
211 |
cagttcacca |
220 |
Q |
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|||||||||| |
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| T |
1350694 |
cagttcacca |
1350703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 1384148 - 1384357
Alignment:
| Q |
11 |
cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagactgaggtctagttttaatttattttcaat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1384148 |
cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagaccgaggtctagttttaatttattttcaat |
1384247 |
T |
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| Q |
111 |
gccttttcaacgaacatatatatagttttgaacttagatggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaacca |
210 |
Q |
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| T |
1384248 |
gccttttcaacgaacatatatatagttttgaacttagatggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaacca |
1384347 |
T |
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| Q |
211 |
cagttcacca |
220 |
Q |
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|||||||||| |
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| T |
1384348 |
cagttcacca |
1384357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 1390253 - 1390462
Alignment:
| Q |
11 |
cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagactgaggtctagttttaatttattttcaat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1390253 |
cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagaccgaggtctagttttaatttattttcaat |
1390352 |
T |
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| Q |
111 |
gccttttcaacgaacatatatatagttttgaacttagatggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaacca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1390353 |
gccttttcaacgaacatatatatagttttgaacttagatggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaacca |
1390452 |
T |
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| Q |
211 |
cagttcacca |
220 |
Q |
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|||||||||| |
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| T |
1390453 |
cagttcacca |
1390462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 1394499 - 1394708
Alignment:
| Q |
11 |
cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagactgaggtctagttttaatttattttcaat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1394499 |
cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagaccgaggtctagttttaatttattttcaat |
1394598 |
T |
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| Q |
111 |
gccttttcaacgaacatatatatagttttgaacttagatggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaacca |
210 |
Q |
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| T |
1394599 |
gccttttcaatgaacatatatatagttttaaacttaaatggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaacca |
1394698 |
T |
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| Q |
211 |
cagttcacca |
220 |
Q |
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|||||||||| |
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| T |
1394699 |
cagttcacca |
1394708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 11 - 220
Target Start/End: Original strand, 1358400 - 1358609
Alignment:
| Q |
11 |
cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagactgaggtctagttttaatttattttcaat |
110 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1358400 |
cagagaacaattggccaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagaccgaggtctagttttaatttattttcaat |
1358499 |
T |
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| Q |
111 |
gccttttcaacgaacatatatatagttttgaacttagatggttaatcggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaacca |
210 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1358500 |
gccttttcaatgaacatatatatagttttgaatttagatggttaattggtttgtcatggttaatctacttgcagaaaggatttgtgtaccgtgagaacca |
1358599 |
T |
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| Q |
211 |
cagttcacca |
220 |
Q |
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|||||||||| |
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| T |
1358600 |
cagttcacca |
1358609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 1373787 - 1373867
Alignment:
| Q |
11 |
cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaattcgagactgaggtcta |
91 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
1373787 |
cagagaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaatttgagaccgaggtcta |
1373867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 1374117 - 1374161
Alignment:
| Q |
176 |
tacttgcagaaaggatttgtgtaccgtgagaaccacagttcacca |
220 |
Q |
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| T |
1374117 |
tacttgcagaaaggatttgtgtaccgtgagaaccacagttcacca |
1374161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 7009807 - 7009868
Alignment:
| Q |
15 |
gaacaattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaatt |
76 |
Q |
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||||||||||| || ||||| ||||||||||| ||||||||||||||| |||| |||||||| |
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| T |
7009807 |
gaacaattggctaaggaagtagaataccttatcaggaagggatgggttccttgtttggaatt |
7009868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 7006716 - 7006774
Alignment:
| Q |
18 |
caattggcgaaagaagttgaataccttataaggaagggatgggttgcttgcttggaatt |
76 |
Q |
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|||||||| || ||||| ||||||||||| ||||||||||||||| |||| |||||||| |
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| T |
7006716 |
caattggctaaggaagtagaataccttatcaggaagggatgggttccttgtttggaatt |
7006774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 7007237 - 7007274
Alignment:
| Q |
183 |
agaaaggatttgtgtaccgtgagaaccacagttcacca |
220 |
Q |
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| T |
7007237 |
agaaaggatttgtctaccgtgagaaccacagttcacca |
7007274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 7010315 - 7010352
Alignment:
| Q |
183 |
agaaaggatttgtgtaccgtgagaaccacagttcacca |
220 |
Q |
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||||||||||||| |||||||||||||||||||||||| |
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| T |
7010315 |
agaaaggatttgtctaccgtgagaaccacagttcacca |
7010352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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