View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21297_low_12 (Length: 324)
Name: NF21297_low_12
Description: NF21297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21297_low_12 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 10748092 - 10748415
Alignment:
| Q |
1 |
taattgtcattcttttttgtctcttggatcctgcaatttatgaggacaaactcagcttaagcatatgttagtttaagtttcaataagttattttctttgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10748092 |
taattgtcattcttttttgtctcttggatcctgcaatttatgaggacaaactcagcttaagcatatgttagtttaagtttcaataagttattttctttgt |
10748191 |
T |
|
| Q |
101 |
gtagtgattatatatacatgttcatcaaactatgaatttattttgttagtttcatctttcactcaacgagccaacattttgttttgttaccagctagaat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10748192 |
gtagtgattatatatacatgttcatcaaactatgaatttattttgttagtttcatctttcactcaacgagccaacattttgttttgttaccagctagaat |
10748291 |
T |
|
| Q |
201 |
tggtttattaatttgtcagcttgagccttttcttctgatttctggtcttcattttgttccttccaagagtaaggatccctttgtataagagcaagtttaa |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10748292 |
tggtttattaatttgtcagcttgatccttttcttctgatttctggtcttcaatttgttccttccaagagtaaggatccctttgtataagagcaagtttaa |
10748391 |
T |
|
| Q |
301 |
agtgattattagataatatgaatt |
324 |
Q |
| |
|
|||||||||||||| ||||||||| |
|
|
| T |
10748392 |
agtgattattagatgatatgaatt |
10748415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University