View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21297_low_13 (Length: 320)
Name: NF21297_low_13
Description: NF21297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21297_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 560243 - 560530
Alignment:
| Q |
16 |
attctaggaaaatgtaggggcttgaatgtaacaaagattatttgtgtgactcaagaccaatttctttgtgcattatctannnnnnn-atagtatctcata |
114 |
Q |
| |
|
|||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
560243 |
attctaggaaaatgtaggtgtttgaatgtaaaaaagattatttgtgtgactcaagaccaatttctttgtgcattatctattttttttatagtatctcata |
560342 |
T |
|
| Q |
115 |
tcattgcttattattcttttgcacttattgaataacctcatagcattagcatttttcatagaaacaagatattatttctgtactaccttcttttcatcca |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
560343 |
tcattgcttattattcttttgcacttattgaataacctcatagcattagcatttttcatagaaacaagatattatttctgtactaccttcttttcatcca |
560442 |
T |
|
| Q |
215 |
aatttttcaattgtatctgtgcctctcatttctgcttacagaatggaccatacaactatgtgatgggaacctgaattgcagaaagtag |
302 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
560443 |
aatttttcagttgtatctgtgcctctcatttctgcttacagaatggaccatacaactatgtgatgggaacctgaattgcagaaagtag |
560530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 172 - 285
Target Start/End: Original strand, 563664 - 563777
Alignment:
| Q |
172 |
atagaaacaagatattatttctgtactaccttcttttcatccaaatttttcaattgtatctgtgcctctcatttctgcttacagaatggaccatacaact |
271 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| || | ||||| ||||||||||| || |||||||||||| |
|
|
| T |
563664 |
atagaaacatgatattatttcaatactaccttcttttcatccaaattttctaattgtatttgggtctctcgtttctgcttacgacatcgaccatacaact |
563763 |
T |
|
| Q |
272 |
atgtgatgggaacc |
285 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
563764 |
atgtgatggaaacc |
563777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University