View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21297_low_14 (Length: 318)

Name: NF21297_low_14
Description: NF21297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21297_low_14
NF21297_low_14
[»] chr5 (18 HSPs)
chr5 (83-223)||(26368380-26368520)
chr5 (15-85)||(13660860-13660930)
chr5 (15-84)||(1265949-1266018)
chr5 (15-84)||(9828393-9828462)
chr5 (15-84)||(22527692-22527761)
chr5 (15-84)||(40004377-40004446)
chr5 (15-84)||(41641095-41641164)
chr5 (15-87)||(3497768-3497840)
chr5 (15-79)||(4902812-4902876)
chr5 (12-95)||(26894838-26894921)
chr5 (15-84)||(6673196-6673265)
chr5 (12-84)||(14913648-14913721)
chr5 (15-84)||(16127259-16127328)
chr5 (15-84)||(34662204-34662273)
chr5 (15-84)||(7951562-7951630)
chr5 (47-84)||(32147294-32147331)
chr5 (51-84)||(32147555-32147588)
chr5 (48-84)||(32964133-32964169)
[»] chr3 (27 HSPs)
chr3 (15-85)||(50647912-50647982)
chr3 (15-84)||(12683150-12683219)
chr3 (12-84)||(7181350-7181422)
chr3 (15-89)||(23700753-23700827)
chr3 (15-89)||(23719208-23719282)
chr3 (15-89)||(23737664-23737738)
chr3 (15-84)||(9499465-9499534)
chr3 (15-84)||(22103897-22103966)
chr3 (15-84)||(25149090-25149159)
chr3 (15-84)||(35868051-35868120)
chr3 (15-84)||(37728713-37728782)
chr3 (15-84)||(44543782-44543851)
chr3 (16-84)||(14428610-14428678)
chr3 (16-87)||(46878408-46878479)
chr3 (15-85)||(45252772-45252842)
chr3 (22-84)||(53361830-53361892)
chr3 (15-84)||(4024052-4024121)
chr3 (15-84)||(43868103-43868172)
chr3 (15-84)||(16435205-16435273)
chr3 (16-84)||(21756486-21756554)
chr3 (12-84)||(46049951-46050023)
chr3 (22-84)||(26593740-26593802)
chr3 (47-84)||(10220933-10220970)
chr3 (47-84)||(12050392-12050429)
chr3 (47-84)||(17699031-17699068)
chr3 (47-84)||(51284062-51284099)
chr3 (47-79)||(33976508-33976540)
[»] chr8 (22 HSPs)
chr8 (15-84)||(44251089-44251158)
chr8 (12-84)||(2944237-2944309)
chr8 (15-90)||(38878715-38878790)
chr8 (15-84)||(51063-51132)
chr8 (15-84)||(13153928-13153997)
chr8 (15-84)||(28192143-28192212)
chr8 (15-84)||(32675725-32675794)
chr8 (12-84)||(9035504-9035576)
chr8 (12-84)||(39029178-39029250)
chr8 (15-87)||(42885051-42885123)
chr8 (22-84)||(29598224-29598286)
chr8 (15-84)||(8251901-8251970)
chr8 (10-91)||(17856740-17856820)
chr8 (15-84)||(18754144-18754213)
chr8 (15-84)||(28579639-28579708)
chr8 (22-84)||(8951403-8951465)
chr8 (47-84)||(1774342-1774379)
chr8 (47-84)||(4631555-4631592)
chr8 (51-88)||(13154192-13154229)
chr8 (47-84)||(28572046-28572083)
chr8 (47-84)||(34568490-34568527)
chr8 (51-84)||(40741528-40741561)
[»] chr4 (27 HSPs)
chr4 (12-85)||(17339077-17339150)
chr4 (15-90)||(4035819-4035894)
chr4 (15-84)||(1859144-1859213)
chr4 (15-84)||(5375525-5375594)
chr4 (15-84)||(5743627-5743696)
chr4 (12-85)||(26625967-26626040)
chr4 (15-84)||(34273187-34273256)
chr4 (15-84)||(36990914-36990983)
chr4 (15-84)||(47806860-47806929)
chr4 (15-84)||(50352064-50352133)
chr4 (15-84)||(52870644-52870713)
chr4 (15-84)||(55632227-55632296)
chr4 (16-84)||(41191597-41191665)
chr4 (15-84)||(9328208-9328277)
chr4 (15-84)||(44294789-44294858)
chr4 (15-84)||(45742774-45742843)
chr4 (15-84)||(49228686-49228755)
chr4 (15-84)||(52977982-52978051)
chr4 (15-84)||(25708647-25708715)
chr4 (47-87)||(32032993-32033033)
chr4 (51-90)||(5743393-5743432)
chr4 (22-81)||(50424829-50424888)
chr4 (47-85)||(50533883-50533921)
chr4 (47-84)||(30771528-30771565)
chr4 (47-84)||(33413518-33413555)
chr4 (51-84)||(39144668-39144701)
chr4 (50-90)||(20391440-20391480)
[»] chr6 (13 HSPs)
chr6 (12-84)||(19097766-19097838)
chr6 (15-84)||(9388759-9388828)
chr6 (15-84)||(34301800-34301869)
chr6 (15-85)||(287382-287452)
chr6 (47-85)||(10195993-10196031)
chr6 (15-84)||(5457412-5457481)
chr6 (15-85)||(8743187-8743256)
chr6 (15-84)||(30248647-30248716)
chr6 (47-86)||(33487831-33487870)
chr6 (15-85)||(23398107-23398177)
chr6 (47-84)||(231105-231142)
chr6 (47-84)||(4844400-4844437)
chr6 (51-84)||(23397879-23397912)
[»] chr1 (23 HSPs)
chr1 (12-84)||(4102679-4102751)
chr1 (15-85)||(23541978-23542048)
chr1 (15-85)||(36694853-36694923)
chr1 (15-85)||(36710954-36711024)
chr1 (15-84)||(1039349-1039418)
chr1 (15-84)||(1046255-1046324)
chr1 (15-84)||(11741397-11741466)
chr1 (15-84)||(15811200-15811269)
chr1 (15-84)||(37951917-37951986)
chr1 (15-84)||(39497433-39497502)
chr1 (15-84)||(45039412-45039481)
chr1 (15-84)||(49907021-49907090)
chr1 (15-84)||(52431142-52431211)
chr1 (11-84)||(14171542-14171614)
chr1 (16-83)||(30289831-30289898)
chr1 (15-85)||(46075835-46075905)
chr1 (15-84)||(30290265-30290334)
chr1 (15-84)||(39363162-39363231)
chr1 (15-84)||(44649629-44649698)
chr1 (47-90)||(50008483-50008526)
chr1 (47-84)||(943637-943674)
chr1 (49-86)||(27669840-27669877)
chr1 (47-84)||(50937779-50937816)
[»] chr2 (16 HSPs)
chr2 (15-85)||(37229439-37229509)
chr2 (15-84)||(2438225-2438294)
chr2 (15-84)||(5664638-5664707)
chr2 (15-84)||(27560206-27560275)
chr2 (15-84)||(34883816-34883885)
chr2 (15-84)||(40607702-40607771)
chr2 (12-91)||(7116264-7116343)
chr2 (15-85)||(17408262-17408332)
chr2 (15-84)||(8716860-8716929)
chr2 (15-84)||(20252210-20252279)
chr2 (15-84)||(34062633-34062702)
chr2 (15-84)||(41450516-41450585)
chr2 (15-84)||(25624733-25624801)
chr2 (21-84)||(36131002-36131065)
chr2 (22-84)||(7491844-7491906)
chr2 (47-84)||(11201683-11201720)
[»] chr7 (23 HSPs)
chr7 (12-85)||(19920562-19920635)
chr7 (15-84)||(21295151-21295220)
chr7 (15-84)||(38858298-38858367)
chr7 (15-84)||(39871581-39871650)
chr7 (15-84)||(41252329-41252398)
chr7 (15-84)||(44510311-44510380)
chr7 (15-84)||(7449270-7449338)
chr7 (17-84)||(29643113-29643180)
chr7 (15-84)||(6387325-6387394)
chr7 (15-84)||(29286005-29286074)
chr7 (15-84)||(32814433-32814502)
chr7 (15-84)||(32872343-32872412)
chr7 (15-84)||(40300230-40300299)
chr7 (15-84)||(41026064-41026133)
chr7 (20-84)||(33858839-33858903)
chr7 (50-84)||(18113169-18113203)
chr7 (22-84)||(39197718-39197780)
chr7 (47-84)||(26255096-26255133)
chr7 (51-84)||(29176992-29177025)
chr7 (47-84)||(36698131-36698168)
chr7 (47-84)||(44547426-44547463)
chr7 (47-84)||(46415005-46415042)
chr7 (47-84)||(48521029-48521066)
[»] scaffold0604 (1 HSPs)
scaffold0604 (12-85)||(3748-3820)
[»] scaffold0029 (1 HSPs)
scaffold0029 (15-84)||(51650-51719)
[»] scaffold0012 (1 HSPs)
scaffold0012 (15-84)||(47640-47709)
[»] scaffold0122 (1 HSPs)
scaffold0122 (15-84)||(12065-12133)
[»] scaffold0002 (1 HSPs)
scaffold0002 (50-84)||(355042-355076)
[»] scaffold0025 (1 HSPs)
scaffold0025 (47-84)||(65637-65674)
[»] scaffold0008 (1 HSPs)
scaffold0008 (47-84)||(259122-259159)


Alignment Details
Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 83 - 223
Target Start/End: Original strand, 26368380 - 26368520
Alignment:
Q  83 tagattataaagtaattttgtacattcttatagaaatgaccaatggcaacaacaattgattccatttcaatcaactaacaacatggacatgaatttcaga 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  26368380 tagattataaagtaattttgtacattcttatagaaatgaccaatggcaacaacaatcgattccacttcaatcaactaacaacatggacatgaatttcaga 26368479  T
Q  183 gcttctactcactaatattctcttaaagcctttagtacgat 223  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26368480 gcttctactcactaatattctcttaaagcctttagtacgat 26368520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 13660930 - 13660860
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtag 85  Q
    ||||||||||||||||||||||||        ||||||||| | |||||||||||||||||||||||||||    
T  13660930 caaaggggtcttataaaaagggacaaaaaaaattctcaaaaggatcttataattagagacggagggagtag 13660860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 1266018 - 1265949
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  1266018 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 1265949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 9828462 - 9828393
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  9828462 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 9828393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 22527761 - 22527692
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  22527761 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 22527692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 40004377 - 40004446
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  40004377 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 40004446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 41641164 - 41641095
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||||| |||||||||||| |||||||||||||    
T  41641164 caaaggggtcttataaaaagggacaaaaaaaattctcaaaatgatcttataattagggacggagggagta 41641095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 3497768 - 3497840
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtagat 87  Q
    ||||||||||||||||||||||||        ||||||||| ||||||||||||||  |||||||||||||||    
T  3497768 caaaggggtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattaggaacggagggagtagat 3497840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 4902876 - 4902812
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagg 79  Q
    ||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||    
T  4902876 caaaggggtcttataaaaagggacaaaaataaatctcaaaatggtcttataattagagacggagg 4902812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 26894838 - 26894921
Alignment:
Q  12 tagcaaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtagattataaagt 95  Q
    ||||||| ||||||||||||||||||         ||||||||| |||||||||||||| ||||||||||||| | ||||||||    
T  26894838 tagcaaatgggtcttataaaaagggataaaaaaaattctcaaaagggtcttataattagggacggagggagtataatataaagt 26894921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 6673196 - 6673265
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||| ||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  6673196 caaagaggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 6673265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 14913721 - 14913648
Alignment:
Q  12 tagcaaaggggtcttataaaaagggacnnnnnnnn-ttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||||||||||||||||||||||||||         ||||||||| |||||||||||||| |||||||||||||    
T  14913721 tagcaaaggggtcttataaaaagggacaaaaaaaaattctcaaaagggtcttataattagggacggagggagta 14913648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 16127328 - 16127259
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||| ||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  16127328 caaagaggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 16127259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 34662273 - 34662204
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||         |||||||| |||||||||||||| |||||||||||||    
T  34662273 caaaggggtcttataaaaagggacaaaaaaaactctcaaaagggtcttataattagggacggagggagta 34662204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 7951630 - 7951562
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        | ||||||| |||||||||||||| |||||||||||||    
T  7951630 caaaggggtcttataaaaagggacaaaaaaaat-ctcaaaagggtcttataattagggacggagggagta 7951562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 32147331 - 32147294
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  32147331 ttctcaaaaaggtcttataattagggacggagggagta 32147294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 32147555 - 32147588
Alignment:
Q  51 caaaatggtcttataattagagacggagggagta 84  Q
    ||||| ||||||||||||||||||||||||||||    
T  32147555 caaaagggtcttataattagagacggagggagta 32147588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 32964169 - 32964133
Alignment:
Q  48 tctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  32964169 tctcaaaatggtcttataattagggacggaggtagta 32964133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 50647912 - 50647982
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtag 85  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||||||||||||||||||    
T  50647912 caaaggggtcttataaaaagggacaaaattttttctcaaaagggtcttataattagagacggagggagtag 50647982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 12683150 - 12683219
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        |||||||||||||||||||||||| |||||||||||||    
T  12683150 caaaggggtcttataaaaagggactaaaaaaattctcaaaatggtcttataattagggacggagggagta 12683219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 7181422 - 7181350
Alignment:
Q  12 tagcaaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  7181422 tagcaaaggggtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagggacggagggagta 7181350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 23700753 - 23700827
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtagatta 89  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| ||||||||||||| ||||    
T  23700753 caaaggggtcttataaaaagggacaaaaaaaattctcaaaaaggtcttataattagggacggagggagtatatta 23700827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 23719208 - 23719282
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtagatta 89  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| ||||||||||||| ||||    
T  23719208 caaaggggtcttataaaaagggacaaaaaaaattctcaaaaaggtcttataattagggacggagggagtatatta 23719282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 23737664 - 23737738
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtagatta 89  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| ||||||||||||| ||||    
T  23737664 caaaggggtcttataaaaagggacaaaaaaaattctcaaaaaggtcttataattagggacggagggagtatatta 23737738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 9499465 - 9499534
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  9499465 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 9499534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 22103897 - 22103966
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  22103897 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 22103966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 25149090 - 25149159
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  25149090 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 25149159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 35868051 - 35868120
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  35868051 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 35868120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 37728782 - 37728713
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  37728782 caaaggggtcttataaaaagggacaacaaatattctcaaaagggtcttataattagggacggagggagta 37728713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 44543851 - 44543782
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  44543851 caaaggggtcttataaaaagggacaaaagaaattctcaaaagggtcttataattagggacggagggagta 44543782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 14428678 - 14428610
Alignment:
Q  16 aaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  14428678 aaaggggtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagggacggagggagta 14428610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 46878408 - 46878479
Alignment:
Q  16 aaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtagat 87  Q
    |||||||||||||||||||||||        ||||||||| |||||||||||||  ||||||||||||||||    
T  46878408 aaaggggtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattaaggacggagggagtagat 46878479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 45252842 - 45252772
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtag 85  Q
    |||| |||||||||||||||||||        ||||||||| |||||||||||||| ||||||||||||||    
T  45252842 caaaagggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtag 45252772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 53361830 - 53361892
Alignment:
Q  22 gtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||||||||||||||||        |||||||||||||||||||||||| |||||||||||||    
T  53361830 gtcttataaaaagggacaaaaaaaattctcaaaatggtcttataattagggacggagggagta 53361892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 4024121 - 4024052
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||         |||||||| |||||||||||||| |||||||||||||    
T  4024121 caaaggggtcttataaaaagggacaaaaaaaaatctcaaaagggtcttataattagggacggagggagta 4024052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 43868172 - 43868103
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||| ||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  43868172 caaagaggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 43868103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 16435205 - 16435273
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| | ||||||||||||||||||||||||||    
T  16435205 caaaggggtcttataaaaagggacaaaaaaa-ttctcaaaaggatcttataattagagacggagggagta 16435273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 21756554 - 21756486
Alignment:
Q  16 aaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||| ||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  21756554 aaagaggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 21756486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 46049951 - 46050023
Alignment:
Q  12 tagcaaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||| |||||||||||||| ||||        ||||||||| |||||||||||||| |||||||||||||    
T  46049951 tagcaaaagggtcttataaaaaaggacaaaaaaatttctcaaaagggtcttataattagggacggagggagta 46050023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 26593740 - 26593802
Alignment:
Q  22 gtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  26593740 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 26593802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 10220970 - 10220933
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  10220970 ttctcaaaagggtcttataattagggacggagggagta 10220933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 12050392 - 12050429
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  12050392 ttctcaaaagggtcttataattagggacggagggagta 12050429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 17699031 - 17699068
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  17699031 ttctcaaaatggtcttataattagggacggaggtagta 17699068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 51284062 - 51284099
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  51284062 ttctcaaaagggtcttataattagggacggagggagta 51284099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 33976540 - 33976508
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagg 79  Q
    |||||||||||||||||||||||| ||||||||    
T  33976540 ttctcaaaatggtcttataattagggacggagg 33976508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 44251089 - 44251158
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        |||||||||||||||||||||||| |||||||||||||    
T  44251089 caaaggggtcttataaaaagggacaaaaaaaattctcaaaatggtcttataattagggacggagggagta 44251158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 2944237 - 2944309
Alignment:
Q  12 tagcaaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  2944237 tagcaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 2944309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 38878790 - 38878715
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtagattat 90  Q
    ||||| ||||||||||||||||||        ||||||||| |||||||||||||||||||||||||||| |||||    
T  38878790 caaagaggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagagacggagggagtacattat 38878715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 51063 - 51132
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  51063 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 51132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 13153997 - 13153928
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  13153997 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 13153928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 28192143 - 28192212
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  28192143 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 28192212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 32675725 - 32675794
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  32675725 caaaggggtcttataaaaagggacaaatttttttctcaaaagggtcttataattagggacggagggagta 32675794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 9035504 - 9035576
Alignment:
Q  12 tagcaaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||  |||        |||||||||||||||||||||||| |||||||||||||    
T  9035504 tagcaaaggggtcttataaaaaaagacaaaaaaaattctcaaaatggtcttataattagggacggagggagta 9035576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 39029250 - 39029178
Alignment:
Q  12 tagcaaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||||||||||||||||||||| ||||        ||||||||| |||||||||||||| |||||||||||||    
T  39029250 tagcaaaggggtcttataaaaaaggacaaaaaattttctcaaaagggtcttataattagggacggagggagta 39029178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 87
Target Start/End: Complemental strand, 42885123 - 42885051
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtagat 87  Q
    ||||||||||||||||||||||||        || |||||| |||||||||||||| ||||||||||||||||    
T  42885123 caaaggggtcttataaaaagggacaattttttttttcaaaagggtcttataattagggacggagggagtagat 42885051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 29598286 - 29598224
Alignment:
Q  22 gtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||||||||||||||||        ||||||||| ||||||||||||||||||||||||||||    
T  29598286 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagagacggagggagta 29598224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 8251901 - 8251970
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||| |||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  8251901 caaaagggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 8251970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 91
Target Start/End: Original strand, 17856740 - 17856820
Alignment:
Q  10 agtagcaaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtagattata 91  Q
    |||| ||||||||||||||||||||||||        || |||||| |||||||||||||| ||||||||||||| ||||||    
T  17856740 agtaacaaaggggtcttataaaaagggacaatttttttt-tcaaaagggtcttataattagggacggagggagtatattata 17856820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 18754213 - 18754144
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||| |||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  18754213 caaaagggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 18754144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 28579708 - 28579639
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||| ||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  28579708 caaagggatcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 28579639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 8951403 - 8951465
Alignment:
Q  22 gtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  8951403 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 8951465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 1774379 - 1774342
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  1774379 ttctcaaaagggtcttataattagggacggagggagta 1774342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 4631555 - 4631592
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||||||||||||||||||||||| |||||| ||||||    
T  4631555 ttctcaaaatggtcttataattagggacggatggagta 4631592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 13154192 - 13154229
Alignment:
Q  51 caaaatggtcttataattagagacggagggagtagatt 88  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  13154192 caaaagggtcttataattagggacggagggagtagatt 13154229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 28572083 - 28572046
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  28572083 ttctcaaaagggtcttataattagggacggagggagta 28572046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 34568527 - 34568490
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  34568527 ttctcaaaagggtcttataattagggacggagggagta 34568490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 40741528 - 40741561
Alignment:
Q  51 caaaatggtcttataattagagacggagggagta 84  Q
    |||||||||||||||||||| |||||||||||||    
T  40741528 caaaatggtcttataattagggacggagggagta 40741561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 17339150 - 17339077
Alignment:
Q  12 tagcaaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtag 85  Q
    |||||||||||||||||||||||||||        ||||||||| ||||||||||||||||||||||| |||||    
T  17339150 tagcaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagagacggaggtagtag 17339077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 90
Target Start/End: Complemental strand, 4035894 - 4035819
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtagattat 90  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| ||||||||||||| |||||    
T  4035894 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtatattat 4035819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 1859213 - 1859144
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  1859213 caaaggggtcttataaaaagggacaaaaaaaattctcaaaaaggtcttataattagggacggagggagta 1859144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 5375525 - 5375594
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  5375525 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 5375594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 5743627 - 5743696
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  5743627 caaaggggtcttataaaaagggacaaatttttttctcaaaagggtcttataattagggacggagggagta 5743696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 26625967 - 26626040
Alignment:
Q  12 tagcaaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtag 85  Q
    |||||||||||||||||||||||||||         |||||||| |||||||||||||| ||||||||||||||    
T  26625967 tagcaaaggggtcttataaaaagggacaaaaaaaaatctcaaaagggtcttataattagggacggagggagtag 26626040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 34273187 - 34273256
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  34273187 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 34273256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 36990983 - 36990914
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| ||||||||||||||||||||||| ||||    
T  36990983 caaaggggtcttataaaaagggacaaaaaaaattctcaaaaaggtcttataattagagacggaggtagta 36990914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 47806929 - 47806860
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  47806929 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 47806860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 50352133 - 50352064
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| | ||||||||||||||||||||||||||    
T  50352133 caaaggggtcttataaaaagggacaaaaaaaattctcaaaaggatcttataattagagacggagggagta 50352064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 52870713 - 52870644
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||| ||||||||||||||||        ||||||||| ||||||||||||||||||||||||||||    
T  52870713 caaagggatcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagagacggagggagta 52870644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 55632227 - 55632296
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| | ||||||||||||||||||||||||||    
T  55632227 caaaggggtcttataaaaagggacaaaaaaaattctcaaaaggatcttataattagagacggagggagta 55632296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 41191597 - 41191665
Alignment:
Q  16 aaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||||||||||||||||||||||        ||||||||| ||||||||||||||||||||||| ||||    
T  41191597 aaaggggtcttataaaaagggacaaatttttttctcaaaagggtcttataattagagacggaggtagta 41191665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 9328208 - 9328277
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||| ||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  9328208 caaagggatcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 9328277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 44294858 - 44294789
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||| ||||        ||||||||| |||||||||||||| |||||||||||||    
T  44294858 caaaggggtcttataaaaaaggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 44294789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 45742774 - 45742843
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||| |||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  45742774 caaaagggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 45742843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 49228686 - 49228755
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        |  |||||| ||||||||||||||||||||||||||||    
T  49228686 caaaggggtcttataaaaagggacaaattttttcttcaaaagggtcttataattagagacggagggagta 49228755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 52978051 - 52977982
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||||| |||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  52978051 caaaggagtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 52977982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 25708647 - 25708715
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  25708647 caaaggggtcttataaaaagggacaaaaaaa-ttctcaaaaaggtcttataattagggacggagggagta 25708715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 32032993 - 32033033
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagtagat 87  Q
    ||||||||| |||||||||||||| ||||||||||||||||    
T  32032993 ttctcaaaagggtcttataattagggacggagggagtagat 32033033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 5743432 - 5743393
Alignment:
Q  51 caaaatggtcttataattagagacggagggagtagattat 90  Q
    |||||||||||||||||||| |||||||||||||| ||||    
T  5743432 caaaatggtcttataattagggacggagggagtagtttat 5743393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 50424829 - 50424888
Alignment:
Q  22 gtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggaggga 81  Q
    |||||||||||||||||        ||||||||| |||||||||||||||||||||||||    
T  50424829 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagagacggaggga 50424888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 50533921 - 50533883
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagtag 85  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  50533921 ttctcaaaatgatcttataattagggacggagggagtag 50533883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 30771565 - 30771528
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  30771565 ttctcaaaagggtcttataattagggacggagggagta 30771528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 33413555 - 33413518
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  33413555 ttctcaaaagggtcttataattagggacggagggagta 33413518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Original strand, 39144668 - 39144701
Alignment:
Q  51 caaaatggtcttataattagagacggagggagta 84  Q
    ||||| ||||||||||||||||||||||||||||    
T  39144668 caaaaaggtcttataattagagacggagggagta 39144701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 20391440 - 20391480
Alignment:
Q  50 tcaaaatggtcttataattagagacggagggagtagattat 90  Q
    |||||| |||||||||||||| |||||||||||||| ||||    
T  20391440 tcaaaagggtcttataattagggacggagggagtagtttat 20391480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 19097766 - 19097838
Alignment:
Q  12 tagcaaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||||||||||||||||||||| ||||        ||||||||| ||||||||||||||||||||||||||||    
T  19097766 tagcaaaggggtcttataaaaaaggacaaaaaaaattctcaaaagggtcttataattagagacggagggagta 19097838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 9388759 - 9388828
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  9388759 caaaggggtcttataaaaagggacaaaaaaaattctcaaaaaggtcttataattagggacggagggagta 9388828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 34301800 - 34301869
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  34301800 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 34301869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 287382 - 287452
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtag 85  Q
    ||||||| ||||||||||||||||        ||||||||| |||||||||||||| ||||||||||||||    
T  287382 caaagggatcttataaaaagggacaaaaaaaattctcaaaaaggtcttataattagggacggagggagtag 287452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 10195993 - 10196031
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagtag 85  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  10195993 ttctcaaaagggtcttataattagagacggagggagtag 10196031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 5457481 - 5457412
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||| ||        ||||||||| |||||||||||||| |||||||||||||    
T  5457481 caaaggggtcttataaaaaggaacaaaaaaaattctcaaaaaggtcttataattagggacggagggagta 5457412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 8743256 - 8743187
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtag 85  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| ||||||||||||||    
T  8743256 caaaggggtcttataaaaagggacaaaaaaa-ttctcaaaagggtcttataattagggacggagggagtag 8743187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 30248716 - 30248647
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||| |||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  30248716 caaatgggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 30248647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 86
Target Start/End: Complemental strand, 33487870 - 33487831
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagtaga 86  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  33487870 ttctcaaaaaggtcttataattagggacggagggagtaga 33487831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 23398107 - 23398177
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtag 85  Q
    |||||||||||||||||||||||         | ||||||| |||||||||||||| ||||||||||||||    
T  23398107 caaaggggtcttataaaaagggataaaaaaaatcctcaaaagggtcttataattagggacggagggagtag 23398177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 231105 - 231142
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  231105 ttctcaaaagggtcttataattagggacggagggagta 231142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 4844437 - 4844400
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  4844437 ttctcaaaagggtcttataattagggacggagggagta 4844400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 23397912 - 23397879
Alignment:
Q  51 caaaatggtcttataattagagacggagggagta 84  Q
    |||||||||||||||||||| |||||||||||||    
T  23397912 caaaatggtcttataattagggacggagggagta 23397879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 4102679 - 4102751
Alignment:
Q  12 tagcaaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  4102679 tagcaaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 4102751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 23542048 - 23541978
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtag 85  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| ||||||||||||||    
T  23542048 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtag 23541978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 36694923 - 36694853
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtag 85  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| ||||||||||||||    
T  36694923 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtag 36694853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 36711024 - 36710954
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtag 85  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| ||||||||||||||    
T  36711024 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtag 36710954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 1039349 - 1039418
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  1039349 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 1039418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 1046255 - 1046324
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  1046255 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 1046324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 11741466 - 11741397
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  11741466 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 11741397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 15811200 - 15811269
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  15811200 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 15811269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 37951917 - 37951986
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  37951917 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 37951986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 39497502 - 39497433
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  39497502 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 39497433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 45039481 - 45039412
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  45039481 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 45039412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 49907090 - 49907021
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  49907090 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 49907021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 52431142 - 52431211
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  52431142 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 52431211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 14171614 - 14171542
Alignment:
Q  11 gtagcaaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||| |||||||||||||||||||||||        ||||||||| ||||||||||||||||||||||||||||    
T  14171614 gtagtaaaggggtcttataaaaagggacaaaaaaa-ttctcaaaagggtcttataattagagacggagggagta 14171542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 30289831 - 30289898
Alignment:
Q  16 aaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagt 83  Q
    |||||||||||||||||||||||        ||||||||| |||||||||||||| ||||||||||||    
T  30289831 aaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagt 30289898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 46075835 - 46075905
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtag 85  Q
    |||| |||||||||||||||||||        ||||||||| |||||||||||||| ||||||||||||||    
T  46075835 caaaagggtcttataaaaagggacaaaaaatattctcaaaagggtcttataattagggacggagggagtag 46075905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 30290334 - 30290265
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||| ||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  30290334 caaagaggtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagggacggagggagta 30290265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 39363162 - 39363231
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||| ||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  39363162 caaagggatcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 39363231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 44649698 - 44649629
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||| ||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  44649698 caaagggatcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 44649629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 90
Target Start/End: Original strand, 50008483 - 50008526
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagtagattat 90  Q
    ||||||||||| |||||||||||| ||||||||||||| |||||    
T  50008483 ttctcaaaatgatcttataattagggacggagggagtatattat 50008526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 943637 - 943674
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  943637 ttctcaaaagggtcttataattagggacggagggagta 943674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 27669877 - 27669840
Alignment:
Q  49 ctcaaaatggtcttataattagagacggagggagtaga 86  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  27669877 ctcaaaatggacttataattagagacggaggtagtaga 27669840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 50937816 - 50937779
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  50937816 ttctcaaaatggtcttataattagggacggaggtagta 50937779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 37229509 - 37229439
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtag 85  Q
    ||||||||||||||||||||||||        |||||||||||||||||||||||| |||||| |||||||    
T  37229509 caaaggggtcttataaaaagggacaaaagaaattctcaaaatggtcttataattagggacggaaggagtag 37229439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 2438294 - 2438225
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  2438294 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 2438225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 5664707 - 5664638
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  5664707 caaaggggtcttataaaaagggacaaaaaaaattctcaaaaaggtcttataattagggacggagggagta 5664638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 27560275 - 27560206
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  27560275 caaaggggtcttataaaaagggacaaaaatttttctcaaaagggtcttataattagggacggagggagta 27560206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 34883816 - 34883885
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  34883816 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 34883885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 40607771 - 40607702
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  40607771 caaaggggtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagggacggagggagta 40607702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 7116264 - 7116343
Alignment:
Q  12 tagcaaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtagattata 91  Q
    ||||||| || ||||||||||||||||        ||||||||| |||||||||||||| |||||||| |||||||||||    
T  7116264 tagcaaaaggatcttataaaaagggacaattttttttctcaaaagggtcttataattagggacggaggtagtagattata 7116343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 17408262 - 17408332
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtag 85  Q
    ||||||| ||||||||||||||||        ||||||||| |||||||||||||| ||||||||||||||    
T  17408262 caaagggatcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagtag 17408332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 8716860 - 8716929
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||| |||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  8716860 caaaagggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 8716929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 20252279 - 20252210
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||||||||||||||||||| |||        ||||||||| |||||||||||||| |||||||||||||    
T  20252279 caaaggggtcttataaaaagtgacaaaagaaattctcaaaagggtcttataattagggacggagggagta 20252210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 34062633 - 34062702
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||| ||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  34062633 caaagggatcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 34062702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 41450585 - 41450516
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||| ||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  41450585 caaagggatcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 41450516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 25624801 - 25624733
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  25624801 caaaggggtcttataaaaagggacaaaaaaa-ttctcaaaaaggtcttataattagggacggagggagta 25624733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 36131002 - 36131065
Alignment:
Q  21 ggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  36131002 ggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 36131065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 7491906 - 7491844
Alignment:
Q  22 gtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  7491906 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 7491844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 11201720 - 11201683
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  11201720 ttctcaaaagggtcttataattagggacggagggagta 11201683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 19920635 - 19920562
Alignment:
Q  12 tagcaaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtag 85  Q
    |||||||||||||||||||||||| ||        ||||||||| |||||||||||||| ||||||||||||||    
T  19920635 tagcaaaggggtcttataaaaaggaacaaaaaaaattctcaaaagggtcttataattagggacggagggagtag 19920562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 21295220 - 21295151
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  21295220 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 21295151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 38858367 - 38858298
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  38858367 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 38858298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 39871581 - 39871650
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  39871581 caaaggggtcttataaaaagggacaaaaaaatttctcaaaagggtcttataattagggacggagggagta 39871650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 41252329 - 41252398
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  41252329 caaaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 41252398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 44510311 - 44510380
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        || ||||||||||||||||||||| |||||||||||||    
T  44510311 caaaggggtcttataaaaagggacaaattattttttcaaaatggtcttataattagggacggagggagta 44510380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 7449338 - 7449270
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        |||||||||||||||||||||||| |||||||||||||    
T  7449338 caaaggggtcttataaaaagggacaaaaaaa-ttctcaaaatggtcttataattagggacggagggagta 7449270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 29643113 - 29643180
Alignment:
Q  17 aaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||        ||||||||| ||||||||||||||||| ||||||||||    
T  29643113 aaggggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagagatggagggagta 29643180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 6387394 - 6387325
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||| ||||||||||||||||||        |||||||||  |||||||||||||||||||||||||||    
T  6387394 caaagaggtcttataaaaagggacaaaaaaaattctcaaaagagtcttataattagagacggagggagta 6387325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 29286005 - 29286074
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||| |||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  29286005 caaaagggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 29286074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 32814502 - 32814433
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||| |||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  32814502 caaatgggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 32814433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 32872343 - 32872412
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||| ||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  32872343 caaagggatcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 32872412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 40300299 - 40300230
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||         |||||||| |||||||||||||| |||||||||||||    
T  40300299 caaaggggtcttataaaaagggacaaaaaaaaatctcaaaagggtcttataattagggacggagggagta 40300230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 41026064 - 41026133
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||| |||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  41026064 caaatgggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 41026133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 33858839 - 33858903
Alignment:
Q  20 gggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  33858839 gggtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 33858903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 84
Target Start/End: Original strand, 18113169 - 18113203
Alignment:
Q  50 tcaaaatggtcttataattagagacggagggagta 84  Q
    |||||| ||||||||||||||||||||||||||||    
T  18113169 tcaaaagggtcttataattagagacggagggagta 18113203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Complemental strand, 39197780 - 39197718
Alignment:
Q  22 gtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  39197780 gtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 39197718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 26255133 - 26255096
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  26255133 ttctcaaaagggtcttataattagggacggagggagta 26255096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 29177025 - 29176992
Alignment:
Q  51 caaaatggtcttataattagagacggagggagta 84  Q
    ||||| ||||||||||||||||||||||||||||    
T  29177025 caaaagggtcttataattagagacggagggagta 29176992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 36698131 - 36698168
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  36698131 ttctcaaaagggtcttataattagggacggagggagta 36698168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 44547463 - 44547426
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  44547463 ttctcaaaaaggtcttataattagggacggagggagta 44547426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 46415005 - 46415042
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  46415005 ttctcaaaatggtcttataattagggacggaggtagta 46415042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 48521066 - 48521029
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  48521066 ttctcaaaagggtcttataattagggacggagggagta 48521029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 85
Target Start/End: Original strand, 3748 - 3820
Alignment:
Q  12 tagcaaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagtag 85  Q
    |||||||||||||||||||||||||||        ||||||||| |||||||||||||| ||||||||||||||    
T  3748 tagcaaaggggtcttataaaaagggacaaaaaaa-ttctcaaaagggtcttataattagggacggagggagtag 3820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 51650 - 51719
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||| ||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  51650 caaagggatcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 51719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 47709 - 47640
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    |||||| |||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  47709 caaaggagtcttataaaaagggacaaaaaaaattctcaaaagggtcttataattagggacggagggagta 47640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 12133 - 12065
Alignment:
Q  15 caaaggggtcttataaaaagggacnnnnnnnnttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||||||||||||||||        ||||||||| |||||||||||||| |||||||||||||    
T  12133 caaaggggtcttataaaaagggacaaaaaaa-ttctcaaaagggtcttataattagggacggagggagta 12065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 84
Target Start/End: Complemental strand, 355076 - 355042
Alignment:
Q  50 tcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||||| |||||||||||||||||||||||    
T  355076 tcaaaatggtcctataattagagacggagggagta 355042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 65637 - 65674
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  65637 ttctcaaaaaggtcttataattagggacggagggagta 65674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 259122 - 259159
Alignment:
Q  47 ttctcaaaatggtcttataattagagacggagggagta 84  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  259122 ttctcaaaagggtcttataattagggacggagggagta 259159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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