View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21297_low_19 (Length: 288)
Name: NF21297_low_19
Description: NF21297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21297_low_19 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 43459486 - 43459754
Alignment:
| Q |
1 |
taaggtgattgagtttacctactagcttcaggtgcaaatccaattgtgtaatatgtaataagaacccaaactatagcctcaaaaatggaaataggaatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43459486 |
taaggtgattgagtttacctactagcttcaggtgcaaatccaattgtgtaatatgtaataagaacccaaactatagcctcaaaaatggaaataggaatcc |
43459585 |
T |
|
| Q |
101 |
ttagaagaaaattagggagagtgtaagtccatggaggatgaaaaaggtgatctctatgtttgtagaacacaggaagtcttgcaattgtgagtggcaactc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43459586 |
ttagaagaaaattagggagagtgtaagtccatggaggatgaaaaaggtgatctctatgtttgtagaacacaggaagtcttgcaattgtgagtggcaactc |
43459685 |
T |
|
| Q |
201 |
agagaaaccattgaacatgttcataatcatagtaaacaaaattgcaccaatataaacagatgcatcacc |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43459686 |
agagaaaccattgaacatgttcataatcatagtaaacaaaattgcaccaatataaacagatgcatcacc |
43459754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 121 - 250
Target Start/End: Complemental strand, 4499553 - 4499424
Alignment:
| Q |
121 |
gtgtaagtccatggaggatgaaaaaggtgatctctatgtttgtagaacacaggaagtcttgcaattgtgagtggcaactcagagaaaccattgaacatgt |
220 |
Q |
| |
|
||||||||||| | |||||| |||||||||||||| ||||| || ||||||||||| ||| |||||| |||| | |||| |||||||||||||||| |
|
|
| T |
4499553 |
gtgtaagtccaagcaggatggaaaaggtgatctctttgtttataaaacacaggaagcctttgaattgttagtgcaagttcagcaaaaccattgaacatgt |
4499454 |
T |
|
| Q |
221 |
tcataatcatagtaaacaaaattgcaccaa |
250 |
Q |
| |
|
|||||||||||| |||||||| ||||||| |
|
|
| T |
4499453 |
tcataatcatagcgaacaaaatcgcaccaa |
4499424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University