View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21297_low_2 (Length: 577)

Name: NF21297_low_2
Description: NF21297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21297_low_2
NF21297_low_2
[»] chr8 (7 HSPs)
chr8 (206-577)||(10635736-10636097)
chr8 (99-159)||(10635629-10635689)
chr8 (427-577)||(44159320-44159470)
chr8 (452-577)||(24286475-24286600)
chr8 (452-577)||(36054987-36055112)
chr8 (452-576)||(40451890-40452014)
chr8 (456-576)||(31452052-31452171)
[»] chr4 (13 HSPs)
chr4 (425-577)||(16559972-16560126)
chr4 (425-577)||(19934443-19934595)
chr4 (452-577)||(31463298-31463423)
chr4 (452-576)||(22665662-22665786)
chr4 (425-577)||(51581434-51581587)
chr4 (427-535)||(2804368-2804474)
chr4 (426-577)||(54400189-54400338)
chr4 (451-577)||(27628844-27628970)
chr4 (451-541)||(33894089-33894179)
chr4 (468-541)||(29533555-29533627)
chr4 (496-576)||(26805729-26805809)
chr4 (519-577)||(49482975-49483033)
chr4 (505-573)||(54357780-54357848)
[»] chr7 (11 HSPs)
chr7 (427-577)||(3408170-3408320)
chr7 (425-577)||(44207614-44207767)
chr7 (431-575)||(16492005-16492149)
chr7 (452-577)||(39321149-39321276)
chr7 (444-577)||(5787238-5787371)
chr7 (471-576)||(45174517-45174622)
chr7 (452-577)||(10980922-10981047)
chr7 (425-541)||(675087-675202)
chr7 (452-575)||(36856526-36856649)
chr7 (467-576)||(35729451-35729560)
chr7 (428-478)||(7322934-7322984)
[»] chr3 (5 HSPs)
chr3 (425-575)||(46055751-46055901)
chr3 (437-577)||(38611337-38611477)
chr3 (465-577)||(38014655-38014767)
chr3 (425-577)||(20499312-20499463)
chr3 (453-569)||(36473310-36473426)
[»] chr1 (14 HSPs)
chr1 (427-575)||(39873296-39873445)
chr1 (428-575)||(37275239-37275386)
chr1 (452-577)||(2351225-2351350)
chr1 (425-577)||(48033880-48034032)
chr1 (425-577)||(26060169-26060324)
chr1 (427-570)||(38680884-38681027)
chr1 (425-577)||(3077022-3077173)
chr1 (452-576)||(30111750-30111874)
chr1 (452-576)||(4551045-4551169)
chr1 (425-564)||(12482352-12482490)
chr1 (427-577)||(15177001-15177151)
chr1 (458-541)||(32512084-32512167)
chr1 (452-564)||(4081206-4081318)
chr1 (493-575)||(21029300-21029382)
[»] chr5 (7 HSPs)
chr5 (425-577)||(33338218-33338369)
chr5 (425-577)||(11680188-11680337)
chr5 (451-576)||(28273372-28273497)
chr5 (432-540)||(41530402-41530510)
chr5 (495-575)||(5108452-5108532)
chr5 (457-576)||(8213025-8213143)
chr5 (425-574)||(24397463-24397610)
[»] chr2 (10 HSPs)
chr2 (425-577)||(9991418-9991570)
chr2 (472-577)||(3095064-3095169)
chr2 (425-576)||(32354707-32354858)
chr2 (452-577)||(41464264-41464389)
chr2 (491-575)||(36402445-36402529)
chr2 (425-575)||(6084687-6084838)
chr2 (452-569)||(40356405-40356521)
chr2 (425-518)||(5711164-5711257)
chr2 (18-81)||(17833100-17833163)
chr2 (467-524)||(18904248-18904305)
[»] chr6 (3 HSPs)
chr6 (425-577)||(22616847-22616997)
chr6 (452-575)||(6614884-6615007)
chr6 (451-576)||(31765774-31765899)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-113; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 206 - 577
Target Start/End: Original strand, 10635736 - 10636097
Alignment:
Q  206 gagaggtaaagataatccacaattcaaaccatttaaatcactaatttacttcatcagccatcactttttgtgttaaaatttaagctcacctacagggtaa 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||    
T  10635736 gagaggtaaagataatccacaattcaaaccatttaaatcactaatttacttcattagccatcactttttgtgttaaaatt-aagttcacctacagggtaa 10635834  T
Q  306 aaagtatagaggagcaattagtactaacacgtacttctctgaacgctacacacatttttcaatagat-cactataacactatactctcacacaaattaat 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||  |||||||||||||||    
T  10635835 aaagtatagaggagcaattagtactaacacgtacttctctgaacgctacacacatttttcaatagatccactatgacactata--ctcacacaaattaat 10635932  T
Q  405 aataatnnnnnnnnnnnnnnggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaata 504  Q
    |||||               ||||||  |||||||||  |||| |  |||||||||||||||||||||||||||||| || || | ||||||||||| ||    
T  10635933 aataa--------aaaaaaaggaaatattaaccattgtccttggggcattggataaatgaacaaaaatagaaattttgtgttgaaaaatgataaaaagta 10636024  T
Q  505 gtcaagttaacttataaaaagtttataaattgttgttaccactgtaaaaatactaattttggttaccttaacc 577  Q
    | |||||||||||||||||||||||| |||| ||||| ||| ||||||| ||||||||||| |||||||||||    
T  10636025 gccaagttaacttataaaaagtttattaattattgtttccaatgtaaaactactaattttgattaccttaacc 10636097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 10635629 - 10635689
Alignment:
Q  99 aaaggaaaatacattatatatagatatccacaacttattggattccatcatttcagatctt 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10635629 aaaggaaaatacattatatatagatatccacaacttattggattccattatttcagatctt 10635689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 427 - 577
Target Start/End: Complemental strand, 44159470 - 44159320
Alignment:
Q  427 aaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagt 526  Q
    |||||||||||||||| |||  || ||||||||||  |||||||||| ||||||| || |||| ||||||||||| |||||||  ||| || |||||| |    
T  44159470 aaatgctaaccattgcccttaggacattggataaagtaacaaaaataaaaattttgtgttggaaaatgataaaaattagtcaaagtaatttgtaaaaaat 44159371  T
Q  527 ttataaattgttgttaccactgtaaaaatactaattttggttaccttaacc 577  Q
    |||||||||||| || ||| ||||||  || ||||||| |||| |||||||    
T  44159370 ttataaattgttattcccaatgtaaagctattaattttagttatcttaacc 44159320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 452 - 577
Target Start/End: Complemental strand, 24286600 - 24286475
Alignment:
Q  452 attggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgtaa 551  Q
    |||||||| | ||||||||||||||||||| || |||| | ||||||||| | ||||||| ||||| ||||| ||||| ||||| ||||| | | | |||    
T  24286600 attggatagaggaacaaaaatagaaattttgtgttggaaagtgataaaaagtggtcaagtcaacttgtaaaatgtttagaaattattgtttctaatataa 24286501  T
Q  552 aaatactaattttggttaccttaacc 577  Q
    || ||||||||||||||||| |||||    
T  24286500 aactactaattttggttaccgtaacc 24286475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 452 - 577
Target Start/End: Original strand, 36054987 - 36055112
Alignment:
Q  452 attggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgtaa 551  Q
    |||||||||| ||||||||||| ||||||| || |||| | ||||||||| | ||||| | ||||| ||||||||| | ||||||||||| | | |||||    
T  36054987 attggataaaggaacaaaaataaaaattttgtgttggaaagtgataaaaagtggtcaaatcaacttgtaaaaagttaacaaattgttgtttctaatgtaa 36055086  T
Q  552 aaatactaattttggttaccttaacc 577  Q
    |  |||||||||||||||| ||||||    
T  36055087 agctactaattttggttactttaacc 36055112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 452 - 576
Target Start/End: Complemental strand, 40452014 - 40451890
Alignment:
Q  452 attggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgtaa 551  Q
    |||||||||| |||||||||| |||||||| || |||| | ||||||||| || |||| | ||||| |||||| |||||||||||||||| |||   |||    
T  40452014 attggataaaggaacaaaaatggaaattttgtgttggaaagtgataaaaagtaatcaaatcaacttgtaaaaaatttataaattgttgtttccaacttaa 40451915  T
Q  552 aaatactaattttggttaccttaac 576  Q
    || ||||||||||| ||| ||||||    
T  40451914 aactactaattttgattatcttaac 40451890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 456 - 576
Target Start/End: Complemental strand, 31452171 - 31452052
Alignment:
Q  456 gataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgtaaaaat 555  Q
    |||||| ||||||||||||||||| | || |||| |||||| |||| | ||||| | |||||  ||||| |||| ||||||||||| | | ||||||  |    
T  31452171 gataaaagaacaaaaatagaaattatgtgttggaaaatgatgaaaagtggtcaaatcaacttgaaaaaa-tttacaaattgttgtttctaatgtaaagct 31452073  T
Q  556 actaattttggttaccttaac 576  Q
    | |||||||||||||||||||    
T  31452072 attaattttggttaccttaac 31452052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 425 - 577
Target Start/End: Original strand, 16559972 - 16560126
Alignment:
Q  425 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaata--gtcaagttaacttataaa 522  Q
    |||||||||||||||||| |||| |  |||||||||| ||| ||||||||||||||| || |||| |||||||||||| |  ||||||| ||||| ||||    
T  16559972 ggaaatgctaaccattgcccttggggcattggataaaggaataaaaatagaaattttgtgttggaaaatgataaaaaaaatggtcaagtcaacttgtaaa 16560071  T
Q  523 aagtttataaattgttgttaccactgtaaaaatactaattttggttaccttaacc 577  Q
    ||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  16560072 aagtttataaattgttgtttccaatgtaaaactactaattttggttaccttaacc 16560126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 425 - 577
Target Start/End: Original strand, 19934443 - 19934595
Alignment:
Q  425 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaa 524  Q
    ||||| ||||||||||||  ||| ||||||||| ||| ||||||||||| ||||||| |  |||| ||||||||||||| ||||||| ||||| ||||||    
T  19934443 ggaaaggctaaccattgcctttgggatattggagaaaggaacaaaaataaaaattttgtattggaaaatgataaaaaatggtcaagtcaacttgtaaaaa 19934542  T
Q  525 gtttataaattgttgttaccactgtaaaaatactaattttggttaccttaacc 577  Q
    |||||||||||||||||   | ||||||| ||||||||||||||| |||||||    
T  19934543 gtttataaattgttgtttttaatgtaaaactactaattttggttatcttaacc 19934595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 452 - 577
Target Start/End: Original strand, 31463298 - 31463423
Alignment:
Q  452 attggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgtaa 551  Q
    |||||||||| ||||||||||||||||||| || |||| | || |||||| | ||||||| ||||| ||||||||||| ||||||||||| |||  ||||    
T  31463298 attggataaaggaacaaaaatagaaattttgtgttggaaagtggtaaaaagtggtcaagtcaacttgtaaaaagtttacaaattgttgtttccaacgtaa 31463397  T
Q  552 aaatactaattttggttaccttaacc 577  Q
    || |||||||||||||||||| ||||    
T  31463398 aactactaattttggttacctcaacc 31463423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 452 - 576
Target Start/End: Complemental strand, 22665786 - 22665662
Alignment:
Q  452 attggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgtaa 551  Q
    |||||||||  ||||||||||||||||||| || |||| ||||||||||| | ||||||| || || ||||||||||| ||||||||||| ||| |||||    
T  22665786 attggataagggaacaaaaatagaaattttctgttggaaaatgataaaaagtggtcaagtcaaattgtaaaaagtttacaaattgttgtttccaatgtaa 22665687  T
Q  552 aaatactaattttggttaccttaac 576  Q
    || || ||| |||||||||||||||    
T  22665686 aactattaaatttggttaccttaac 22665662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 425 - 577
Target Start/End: Original strand, 51581434 - 51581587
Alignment:
Q  425 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaa-tagtcaagttaacttataaaa 523  Q
    |||||||||||  | ||| ||||||  |||||||||| ||||||||||||||||||| || |||| | |||||||||| | ||||||||||||| |||||    
T  51581434 ggaaatgctaaagagtgcccttgaggcattggataaaggaacaaaaatagaaattttgtgttggaaagtgataaaaaagtggtcaagttaacttgtaaaa 51581533  T
Q  524 agtttataaattgttgttaccactgtaaaaatactaattttggttaccttaacc 577  Q
      |||| |||||||||||  || ||||||   ||||||||||||||||||||||    
T  51581534 catttacaaattgttgttttcaatgtaaagcgactaattttggttaccttaacc 51581587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 427 - 535
Target Start/End: Complemental strand, 2804474 - 2804368
Alignment:
Q  427 aaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagt 526  Q
    ||||| |||||||||| |||| |||  || ||||| ||||||||||||||||||| || |||| ||||||||||| ||||||||| ||||| ||||||||    
T  2804474 aaatgataaccattgcccttgggat--tgaataaaggaacaaaaatagaaattttgtgttggaaaatgataaaaagtagtcaagtcaacttgtaaaaagt 2804377  T
Q  527 ttataaatt 535  Q
    |||||||||    
T  2804376 ttataaatt 2804368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 426 - 577
Target Start/End: Complemental strand, 54400338 - 54400189
Alignment:
Q  426 gaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaag 525  Q
    ||||||||||||||||| || | |  |||||||||| ||| ||||||| ||||||| || |||| ||||||| ||||| || |||| ||||| |||||||    
T  54400338 gaaatgctaaccattgccctcggggcattggataaaggaataaaaataaaaattttgtgttggaaaatgata-aaaatggttaagtcaacttgtaaaaag 54400240  T
Q  526 tttataaattgttgttaccactgtaaaaatactaattttggttaccttaacc 577  Q
    ||||| |||||||||| ||  ||||||  || ||||||||||||||||||||    
T  54400239 tttat-aattgttgtttccgatgtaaagctattaattttggttaccttaacc 54400189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 451 - 577
Target Start/End: Complemental strand, 27628970 - 27628844
Alignment:
Q  451 tattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgta 550  Q
    ||||||||||| ||||||||||| |||  || || |||| |||||| |||| | ||||||| ||||| |||||||||||||||||||||||  || ||||    
T  27628970 tattggataaaagaacaaaaataaaaaaattttgttggaaaatgattaaaagtggtcaagtcaacttgtaaaaagtttataaattgttgttttcaatgta 27628871  T
Q  551 aaaatactaattttggttaccttaacc 577  Q
    ||  |||||||| |||||||| |||||    
T  27628870 aagctactaattctggttaccataacc 27628844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 451 - 541
Target Start/End: Complemental strand, 33894179 - 33894089
Alignment:
Q  451 tattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtt 541  Q
    ||||||||||| ||||||||||| ||||||| || | || | ||||||||| |||| |||| || || |||||||||||||||||||||||    
T  33894179 tattggataaaggaacaaaaataaaaattttgtgttagatagtgataaaaagtagtaaagtcaatttgtaaaaagtttataaattgttgtt 33894089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 468 - 541
Target Start/End: Original strand, 29533555 - 29533627
Alignment:
Q  468 aaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtt 541  Q
    |||||||||||||| || |||| ||||||||||| ||||||||| ||||| |||||||||||| ||||||||||    
T  29533555 aaaatagaaattttttgttggaaaatgataaaaagtagtcaagtcaacttgtaaaaagtttat-aattgttgtt 29533627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 496 - 576
Target Start/End: Original strand, 26805729 - 26805809
Alignment:
Q  496 taaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgtaaaaatactaattttggttaccttaac 576  Q
    |||||| | ||||||| | ||| ||||||||||| ||||||||||| ||| ||||||  ||||||||||||||||||||||    
T  26805729 taaaaagtggtcaagtcagcttgtaaaaagtttaaaaattgttgtttccaatgtaaagctactaattttggttaccttaac 26805809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 519 - 577
Target Start/End: Original strand, 49482975 - 49483033
Alignment:
Q  519 taaaaagtttataaattgttgttaccactgtaaaaatactaattttggttaccttaacc 577  Q
    |||||||||||||||||||||||  || ||||||  |||||||||||||||||||||||    
T  49482975 taaaaagtttataaattgttgttttcaatgtaaagctactaattttggttaccttaacc 49483033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 573
Target Start/End: Original strand, 54357780 - 54357848
Alignment:
Q  505 gtcaagttaacttataaaaagtttataaattgttgttaccactgtaaaaatactaattttggttacctt 573  Q
    ||||| ||||||| ||||||||||| |||||||| ||  || ||||||  || ||||||||||||||||    
T  54357780 gtcaaattaacttgtaaaaagtttacaaattgttcttttcaatgtaaagttattaattttggttacctt 54357848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 427 - 577
Target Start/End: Complemental strand, 3408320 - 3408170
Alignment:
Q  427 aaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagt 526  Q
    |||||||||||||||| |||| || |||| ||||| ||||||||||||||||||| || || | ||||||||||| ||||||||| ||||| ||||||||    
T  3408320 aaatgctaaccattgctcttgggacattgaataaaagaacaaaaatagaaattttgtgttgaaaaatgataaaaagtagtcaagtcaacttgtaaaaagt 3408221  T
Q  527 ttataaattgttgttaccactgtaaaaatactaattttggttaccttaacc 577  Q
    | ||||||||||||| ||| ||||||  |||||||||||| ||||||||||    
T  3408220 taataaattgttgtttccaatgtaaagctactaattttggctaccttaacc 3408170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 425 - 577
Target Start/End: Complemental strand, 44207767 - 44207614
Alignment:
Q  425 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaa-tgataaaaaatagtcaagttaacttataaaa 523  Q
    |||||||||||||||||| |||| |  |||||||||| ||||||||||||||||||| || |||| || ||||||||| ||||||||| ||||| |||||    
T  44207767 ggaaatgctaaccattgcccttgtggcattggataaaggaacaaaaatagaaattttgtgttggaaaaatgataaaaagtagtcaagtcaacttgtaaaa 44207668  T
Q  524 agtttataaattgttgttaccactgtaaaaatactaattttggttaccttaacc 577  Q
      |||||||||||||||| ||| | ||||  |||||||||||||||||||||||    
T  44207667 tttttataaattgttgtttccaatataaagctactaattttggttaccttaacc 44207614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 431 - 575
Target Start/End: Original strand, 16492005 - 16492149
Alignment:
Q  431 gctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttat 530  Q
    |||||||||||| |||  |  |||||||||| |||||||| |||||||||| || | || ||||||||||| ||||||||| ||||| ||||||||||||    
T  16492005 gctaaccattgcccttagggcattggataaaggaacaaaactagaaattttgtgttagaaaatgataaaaagtagtcaagtcaacttgtaaaaagtttat 16492104  T
Q  531 aaattgttgttaccactgtaaaaatactaattttggttaccttaa 575  Q
    ||||||||||| ||| ||||||  ||||||||| |||||||||||    
T  16492105 aaattgttgtttccaatgtaaagttactaatttcggttaccttaa 16492149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 452 - 577
Target Start/End: Complemental strand, 39321276 - 39321149
Alignment:
Q  452 attggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaa--tagtcaagttaacttataaaaagtttataaattgttgttaccactgt 549  Q
    |||||||||| ||||||||||| ||||||| || |||| ||||||||||||  ||||||| | ||||| ||||||||||||||||||||||| ||| |||    
T  39321276 attggataaaggaacaaaaatataaattttgtgttggaaaatgataaaaaaaatagtcaaatcaacttgtaaaaagtttataaattgttgtttccaatgt 39321177  T
Q  550 aaaaatactaattttggttaccttaacc 577  Q
    |||  |||||||||||||||||||||||    
T  39321176 aaagctactaattttggttaccttaacc 39321149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 444 - 577
Target Start/End: Complemental strand, 5787371 - 5787238
Alignment:
Q  444 cttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttac 543  Q
    |||| ||||||||||| | ||||||||||| ||| |||||| |||| | ||||||||| | ||||||| | ||||||||||||||| ||||| |||||      
T  5787371 cttgtgatattggatagaggaacaaaaataaaaaatttatgttggaaagtgataaaaagtggtcaagtcatcttataaaaagtttacaaattattgtttt 5787272  T
Q  544 cactgtaaaaatactaattttggttaccttaacc 577  Q
    || ||||||| || ||||||||||||| ||||||    
T  5787271 caatgtaaaactattaattttggttacattaacc 5787238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 471 - 576
Target Start/End: Original strand, 45174517 - 45174622
Alignment:
Q  471 atagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgtaaaaatactaattttggttac 570  Q
    ||||||||||| || || | ||||||||||| | ||||||| ||||| ||||||||||||||||||||||| ||| ||||||| || ||||||||||||     
T  45174517 atagaaattttgtgttgaaaaatgataaaaattggtcaagtcaacttgtaaaaagtttataaattgttgtttccaatgtaaaactattaattttggttat 45174616  T
Q  571 cttaac 576  Q
    ||||||    
T  45174617 cttaac 45174622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 452 - 577
Target Start/End: Complemental strand, 10981047 - 10980922
Alignment:
Q  452 attggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgtaa 551  Q
    ||||||||||  |||||||||  |||| || || |||| ||||||||||| || |||||| ||||| ||||||||||||||||| |||||  || |||||    
T  10981047 attggataaagaaacaaaaatgaaaatgttgtgttggaaaatgataaaaagtactcaagtcaacttgtaaaaagtttataaattattgttttcaatgtaa 10980948  T
Q  552 aaatactaattttggttaccttaacc 577  Q
    | |||||||||||||||  |||||||    
T  10980947 agatactaattttggttgtcttaacc 10980922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 425 - 541
Target Start/End: Original strand, 675087 - 675202
Alignment:
Q  425 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaa 524  Q
    |||||||||||||||||| |||  |  |||||||||| ||| ||||||||||||||| || |||| ||| ||||||| | ||||| | ||||  ||||||    
T  675087 ggaaatgctaaccattgccctttgggcattggataaa-gaaaaaaaatagaaattttgtgttggaaaataataaaaagtggtcaaatcaactagtaaaaa 675185  T
Q  525 gtttataaattgttgtt 541  Q
    |||||||||||||||||    
T  675186 gtttataaattgttgtt 675202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 452 - 575
Target Start/End: Complemental strand, 36856649 - 36856526
Alignment:
Q  452 attggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgtaa 551  Q
    |||||||||| ||||||||||||||||| | |  | || | ||||||||| |  |||||| ||||| ||||||||||| |||| |||||| ||| | |||    
T  36856649 attggataaaggaacaaaaatagaaattgtgtattagaaagtgataaaaagtgatcaagtcaacttgtaaaaagtttacaaatagttgtttccaatataa 36856550  T
Q  552 aaatactaattttggttaccttaa 575  Q
    |  |||||||||||||||||||||    
T  36856549 agttactaattttggttaccttaa 36856526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 467 - 576
Target Start/End: Original strand, 35729451 - 35729560
Alignment:
Q  467 aaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgtaaaaatactaattttgg 566  Q
    ||||||||||||| | || || | | ||||||||| | || |||| ||||| |||||| |||||||||| ||||| ||| ||||||| ||||||||||||    
T  35729451 aaaaatagaaattgtgtgttgaaaagtgataaaaagtggttaagtcaacttgtaaaaaatttataaattattgtttccaatgtaaaactactaattttgg 35729550  T
Q  567 ttaccttaac 576  Q
    |||| |||||    
T  35729551 ttactttaac 35729560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 478
Target Start/End: Original strand, 7322934 - 7322984
Alignment:
Q  428 aatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaat 478  Q
    ||||||||||||||| |||||||||||||||||  | | ||||||||||||    
T  7322934 aatgctaaccattgcccttgagatattggataagaggataaaaatagaaat 7322984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 425 - 575
Target Start/End: Original strand, 46055751 - 46055901
Alignment:
Q  425 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaa 524  Q
    |||||||||||||||||| ||||    |||||||||| ||||||||||||||||||| || |||| ||||||||||| ||||||||| ||||| ||||||    
T  46055751 ggaaatgctaaccattgcccttggagcattggataaaggaacaaaaatagaaattttgtgttggaaaatgataaaaagtagtcaagtcaacttgtaaaaa 46055850  T
Q  525 gtttataaattgttgttaccactgtaaaaatactaattttggttaccttaa 575  Q
    ||| |||||||||||||   | ||||||| |||||||||||||||||||||    
T  46055851 gttaataaattgttgtttttaatgtaaaactactaattttggttaccttaa 46055901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 437 - 577
Target Start/End: Complemental strand, 38611477 - 38611337
Alignment:
Q  437 cattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattg 536  Q
    |||||| |||| || |||||||||| ||| ||||||||||||||| || |||| ||||||| ||| | ||||||| ||||| ||||||||||||||||||    
T  38611477 cattgcccttgggacattggataaaggaagaaaaatagaaattttgtgttggaaaatgatagaaagttgtcaagtcaacttgtaaaaagtttataaattg 38611378  T
Q  537 ttgttaccactgtaaaaatactaattttggttaccttaacc 577  Q
    ||||| ||| | ||||  |||||||||| ||||||||||||    
T  38611377 ttgtttccaatataaagctactaattttagttaccttaacc 38611337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 465 - 577
Target Start/End: Original strand, 38014655 - 38014767
Alignment:
Q  465 acaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgtaaaaatactaatttt 564  Q
    ||||||||| ||||||| || |||| ||||||||||| | ||||||| |||||||||||||||||||||| |||||| ||| ||||||  ||||||||||    
T  38014655 acaaaaatataaattttgtgttggaaaatgataaaaagtggtcaagtcaacttataaaaagtttataaatcgttgtttccaatgtaaagctactaatttt 38014754  T
Q  565 ggttaccttaacc 577  Q
    | |||||||||||    
T  38014755 gattaccttaacc 38014767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 425 - 577
Target Start/End: Complemental strand, 20499463 - 20499312
Alignment:
Q  425 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaa 524  Q
    ||||||||||| |||||| ||||  | |||||||||| ||||||||||||||||||| || | || || |||||||| || |||||| || |||||||||    
T  20499463 ggaaatgctaatcattgctcttggaacattggataaaggaacaaaaatagaaattttgtg-ttgaaaacgataaaaagtaatcaagtcaatttataaaaa 20499365  T
Q  525 gtttataaattgttgttaccactgtaaaaatactaattttggttaccttaacc 577  Q
    ||||||||||| || ||   | | ||||| || ||||||||||||| ||||||    
T  20499364 gtttataaattattatttttaatataaaactattaattttggttactttaacc 20499312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 453 - 569
Target Start/End: Original strand, 36473310 - 36473426
Alignment:
Q  453 ttggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgtaaa 552  Q
    ||||||||| ||||||||||||||| ||| || || | ||||||||||| | ||||||| ||| | |||||||||||||||||||| ||  || || |||    
T  36473310 ttggataaaggaacaaaaatagaaaatttgtgttgaaaaatgataaaaagtggtcaagtcaacgtgtaaaaagtttataaattgttattttcaatgcaaa 36473409  T
Q  553 aatactaattttggtta 569  Q
      |||||||||||||||    
T  36473410 gctactaattttggtta 36473426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 5e-36; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 427 - 575
Target Start/End: Original strand, 39873296 - 39873445
Alignment:
Q  427 aaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagt 526  Q
    ||||| ||||||||||  ||||| ||||| ||||| |||||||||||||||||||||| |||| ||||||||||| ||||||||| ||||| |||||| |    
T  39873296 aaatgttaaccattgcctttgaggtattgaataaaggaacaaaaatagaaattttatgttggaaaatgataaaaagtagtcaagtcaacttgtaaaaaat 39873395  T
Q  527 ttataaattgttgttaccactg-taaaaatactaattttggttaccttaa 575  Q
    ||||||||||||||| ||| || ||||| || ||||||||||||||||||    
T  39873396 ttataaattgttgtttccaatgttaaaactattaattttggttaccttaa 39873445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 428 - 575
Target Start/End: Original strand, 37275239 - 37275386
Alignment:
Q  428 aatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtt 527  Q
    ||||||||||||||| ||| ||  |||||||||| | ||||||||||||||||| |  |||| ||||||||||||| ||||||  |||||||||||||||    
T  37275239 aatgctaaccattgcccttcaggcattggataaaggtacaaaaatagaaattttgtattggaaaatgataaaaaatggtcaagacaacttataaaaagtt 37275338  T
Q  528 tataaattgttgttaccactgtaaaaatactaattttggttaccttaa 575  Q
    |||||||||||||| ||| ||||||| || |||||||| |||||||||    
T  37275339 tataaattgttgtttccaatgtaaaactaataattttgattaccttaa 37275386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 452 - 577
Target Start/End: Original strand, 2351225 - 2351350
Alignment:
Q  452 attggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgtaa 551  Q
    ||||||||||  |||||||||| ||||||| || || | ||||||||||||| ||||||| ||||||||||||||||| ||||||||||| ||| |||||    
T  2351225 attggataaagaaacaaaaataaaaattttgtgttgaaaaatgataaaaaatggtcaagtcaacttataaaaagtttacaaattgttgtttccaatgtaa 2351324  T
Q  552 aaatactaattttggttaccttaacc 577  Q
    |  || ||||||||||||||||||||    
T  2351325 acctattaattttggttaccttaacc 2351350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 425 - 577
Target Start/End: Complemental strand, 48034032 - 48033880
Alignment:
Q  425 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaa 524  Q
    ||||||||||| |||||| |||| |  ||| |||||| ||||||||||||||||||| || |||| || ||  |||| | ||||||  ||||| ||||||    
T  48034032 ggaaatgctaatcattgcccttggggcattagataaaggaacaaaaatagaaattttgtgttggaaaaagaagaaaagtggtcaagccaacttgtaaaaa 48033933  T
Q  525 gtttataaattgttgttaccactgtaaaaatactaattttggttaccttaacc 577  Q
    ||||||||||||||||| ||| ||||||  |||||||||||||||||||||||    
T  48033932 gtttataaattgttgtttccaatgtaaagctactaattttggttaccttaacc 48033880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 425 - 577
Target Start/End: Complemental strand, 26060324 - 26060169
Alignment:
Q  425 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaata----gtcaagttaacttata 520  Q
    |||||||||||||||||| ||||    |||||||||   || ||||||||||||||||||||| | |||||||||||| |    ||||| | ||||| ||    
T  26060324 ggaaatgctaaccattgcccttggagcattggataaga-aataaaaatagaaattttatgctgaaaaatgataaaaaaaaagtggtcaaatcaacttgta 26060226  T
Q  521 aaaagtttataaattgttgttaccactgtaaaaatactaattttggttaccttaacc 577  Q
    ||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  26060225 aaaagtttataaattgttgtttccaatgtaaaactactaattttggttaccttaacc 26060169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 427 - 570
Target Start/End: Original strand, 38680884 - 38681027
Alignment:
Q  427 aaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagt 526  Q
    |||||||||||||||| |||| |  |||||||||| |||||  |||| ||||||| || |||| ||| ||||||||| |||||||||| || |||||| |    
T  38680884 aaatgctaaccattgctcttggggcattggataaaggaacatcaataaaaattttgtgttggaaaataataaaaaattgtcaagttaatttgtaaaaaat 38680983  T
Q  527 ttataaattgttgttaccactgtaaaaatactaattttggttac 570  Q
    ||||||||||||||| ||| ||||||| || |||||||||||||    
T  38680984 ttataaattgttgtttccaatgtaaaactaataattttggttac 38681027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 425 - 577
Target Start/End: Original strand, 3077022 - 3077173
Alignment:
Q  425 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaa 524  Q
    |||||||||||| ||||   ||||| ||||||||||| ||| ||||||||||||||| || |||| ||| ||||||| | ||||| ||||||| ||||||    
T  3077022 ggaaatgctaactattgtttttgag-tattggataaaggaataaaaatagaaattttgtgttggaaaataataaaaagtggtcaaattaacttgtaaaaa 3077120  T
Q  525 gtttataaattgttgttaccactgtaaaaatactaattttggttaccttaacc 577  Q
     |||||||||| |||||  || ||||||  |||||||||| ||||||||||||    
T  3077121 atttataaattattgtttacaatgtaaagttactaattttagttaccttaacc 3077173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 452 - 576
Target Start/End: Complemental strand, 30111874 - 30111750
Alignment:
Q  452 attggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgtaa 551  Q
    |||||||||  ||||||||||| ||||||| ||  ||| ||||||||||| | ||||||| |||||||||||| |||| ||||||||||| | | | |||    
T  30111874 attggataagggaacaaaaatacaaattttgtgtcggaaaatgataaaaagtggtcaagtcaacttataaaaaatttacaaattgttgtttctaatataa 30111775  T
Q  552 aaatactaattttggttaccttaac 576  Q
    || ||||||||||||||||||||||    
T  30111774 aactactaattttggttaccttaac 30111750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 452 - 576
Target Start/End: Complemental strand, 4551169 - 4551045
Alignment:
Q  452 attggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgtaa 551  Q
    |||||||||  ||||||||||||||||||| || |||| |||||| |||| | |||||||  |||| |||||||||||||||||||||||  |  |||||    
T  4551169 attggataatggaacaaaaatagaaattttgtgttggaaaatgatgaaaagtggtcaagtcgacttgtaaaaagtttataaattgttgtttacgatgtaa 4551070  T
Q  552 aaatactaattttggttaccttaac 576  Q
    |  || |||||||||||||||||||    
T  4551069 agctattaattttggttaccttaac 4551045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 425 - 564
Target Start/End: Original strand, 12482352 - 12482490
Alignment:
Q  425 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaa 524  Q
    ||||||||||||||| ||  ||| ||||||||||||| ||||||||||| ||||||| || |||| ||||||||||| |  |||| | ||||| ||||||    
T  12482352 ggaaatgctaaccatggcttttgggatattggataaaggaacaaaaataaaaattttgtgttggaaaatgataaaaagtgatcaaatcaacttgtaaaaa 12482451  T
Q  525 gtttataaattgttgttaccactgtaaaaatactaatttt 564  Q
    ||||| |||||||||||   | ||||||| ||||||||||    
T  12482452 gttta-aaattgttgtttttaatgtaaaactactaatttt 12482490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 427 - 577
Target Start/End: Original strand, 15177001 - 15177151
Alignment:
Q  427 aaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagt 526  Q
    ||||| ||| |||||| ||||||  ||||||||||  |||||||||| ||||||| || || | ||||||||||||| || |||||||||| |||||| |    
T  15177001 aaatgttaatcattgcccttgaggcattggataaagaaacaaaaataaaaattttgtgttgaacaatgataaaaaatggttaagttaacttgtaaaaaat 15177100  T
Q  527 ttataaattgttgttaccactgtaaaaatactaattttggttaccttaacc 577  Q
    |||||||| ||||||  || | || || || ||||||| ||||||||||||    
T  15177101 ttataaatcgttgttttcaatatataactattaattttagttaccttaacc 15177151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 458 - 541
Target Start/End: Complemental strand, 32512167 - 32512084
Alignment:
Q  458 taaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgtt 541  Q
    |||| ||||||||||||||||||| || |||| ||||||||||| |  |||||| ||||| |||||| ||||||||||||||||    
T  32512167 taaaggaacaaaaatagaaattttgtgttggaaaatgataaaaagtgatcaagtcaacttgtaaaaattttataaattgttgtt 32512084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 452 - 564
Target Start/End: Original strand, 4081206 - 4081318
Alignment:
Q  452 attggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgtaa 551  Q
    ||||||||||  |||||||||||||||| | || |||| | |||| |||| | ||||||| || ||||||||||||| ||||||||| || ||| |||||    
T  4081206 attggataaagaaacaaaaatagaaattatgtgttggaaagtgatgaaaagtggtcaagtaaatttataaaaagtttttaaattgttatttccaatgtaa 4081305  T
Q  552 aaatactaatttt 564  Q
    || | ||||||||    
T  4081306 aattgctaatttt 4081318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 493 - 575
Target Start/End: Complemental strand, 21029382 - 21029300
Alignment:
Q  493 tgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgtaaaaatactaattttggttaccttaa 575  Q
    ||||||||| |  |||||| ||||||||||| ||||||||||| |||||  || ||||||| |||||||||| ||||||||||    
T  21029382 tgataaaaagttatcaagtcaacttataaaatgtttataaattattgttttcaatgtaaaactactaatttttgttaccttaa 21029300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 425 - 577
Target Start/End: Original strand, 33338218 - 33338369
Alignment:
Q  425 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaa 524  Q
    |||||||||||| ||||| |||||   |||||||||| ||| ||||||||| ||||| |  |||| ||||||||||| ||||||||| ||||||||||||    
T  33338218 ggaaatgctaactattgcccttgatgcattggataaaggaataaaaatagatattttgtt-tggaaaatgataaaaagtagtcaagtcaacttataaaaa 33338316  T
Q  525 gtttataaattgttgttaccactgtaaaaatactaattttggttaccttaacc 577  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||| ||||||    
T  33338317 gtttataaattgttgtttccaatgtaaaactactaattttggttactttaacc 33338369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 425 - 577
Target Start/End: Original strand, 11680188 - 11680337
Alignment:
Q  425 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaa 524  Q
    |||||||||||||||||| |||| | | ||| ||||| ||||||||||||||||||| || |||| |||||||||| ||||| |||| ||||| ||||||    
T  11680188 ggaaatgctaaccattgcccttggggttttgaataaaggaacaaaaatagaaattttgtgttggaaaatgataaaagatagttaagtcaacttgtaaaaa 11680287  T
Q  525 gtttataaattgttgttaccactgtaaaaatactaattttggttaccttaacc 577  Q
    ||    ||||||||||| ||| ||||||  || ||||||||||||| ||||||    
T  11680288 gt---caaattgttgtttccagtgtaaagctattaattttggttactttaacc 11680337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 451 - 576
Target Start/End: Original strand, 28273372 - 28273497
Alignment:
Q  451 tattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgta 550  Q
    ||||| ||||| ||||||||||||||| ||| || | || ||||||||||| | || || | ||||||||| ||||||||||||||||||| ||| | ||    
T  28273372 tattgaataaaggaacaaaaatagaaactttgtgttagaaaatgataaaaagtggttaaatcaacttataacaagtttataaattgttgtttccaatata 28273471  T
Q  551 aaaatactaattttggttaccttaac 576  Q
    ||| ||||||||||||||||||||||    
T  28273472 aaactactaattttggttaccttaac 28273497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 432 - 540
Target Start/End: Complemental strand, 41530510 - 41530402
Alignment:
Q  432 ctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttata 531  Q
    |||||||||||  || ||  |||||||||| |||  |||||||||||||| || || | ||||||||||||  ||||||| |||||||||||||||||||    
T  41530510 ctaaccattgcctttaaggcattggataaaggaatgaaaatagaaattttgtgttgcaaaatgataaaaaacggtcaagtcaacttataaaaagtttata 41530411  T
Q  532 aattgttgt 540  Q
    |||||||||    
T  41530410 aattgttgt 41530402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 495 - 575
Target Start/End: Original strand, 5108452 - 5108532
Alignment:
Q  495 ataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgtaaaaatactaattttggttaccttaa 575  Q
    ||||||| | |||||||||| || |||||| |||||||||||||||| ||| ||||||| | |||||||||||||||||||    
T  5108452 ataaaaagtggtcaagttaatttgtaaaaactttataaattgttgtttccaatgtaaaactgctaattttggttaccttaa 5108532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 457 - 576
Target Start/End: Original strand, 8213025 - 8213143
Alignment:
Q  457 ataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgtaaaaata 556  Q
    ||||| ||||||||||| ||||| |||| || | |||||||||||||| |||| | ||||| ||||| ||||||||||| ||||| |   ||||||  ||    
T  8213025 ataaaagaacaaaaataaaaattctatgttgaaaaatgataaaaaataatcaaatcaacttgtaaaa-gtttataaattattgtttctgatgtaaagcta 8213123  T
Q  557 ctaattttggttaccttaac 576  Q
    ||||||||||||||||||||    
T  8213124 ctaattttggttaccttaac 8213143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 574
Target Start/End: Complemental strand, 24397610 - 24397463
Alignment:
Q  425 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaa 524  Q
    ||||||||||| |||||| |||| |  |||| ||||| |||||||| || ||||||| || || | ||||||||||| |||||  || ||||| ||||||    
T  24397610 ggaaatgctaatcattgcccttggggcattgaataaaggaacaaaa-ta-aaattttgtgttgaaaaatgataaaaagtagtcgcgtcaacttgtaaaaa 24397513  T
Q  525 gtttataaattgttgttaccactgtaaaaatactaattttggttacctta 574  Q
    ||||||||||| |||||  || | ||||   |||||||||||||||||||    
T  24397512 gtttataaattattgttttcaatctaaagccactaattttggttacctta 24397463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 425 - 577
Target Start/End: Original strand, 9991418 - 9991570
Alignment:
Q  425 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaa 524  Q
    |||||||||||||||||| |||| |  ||||||||||  |||||||||||||||||| |  |||| ||||||||||| ||||||| | ||||| ||||||    
T  9991418 ggaaatgctaaccattgcccttggggcattggataaagaaacaaaaatagaaattttgtattggaaaatgataaaaagtagtcaaatcaacttgtaaaaa 9991517  T
Q  525 gtttataaattgttgttaccactgtaaaaatactaattttggttaccttaacc 577  Q
     ||||||||||||||||  || ||||||| ||||||||||| |||||||||||    
T  9991518 atttataaattgttgttttcaatgtaaaactactaattttgattaccttaacc 9991570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 472 - 577
Target Start/End: Original strand, 3095064 - 3095169
Alignment:
Q  472 tagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgtaaaaatactaattttggttacc 571  Q
    |||||||||| || |||| ||||||||||||||||||| | ||||| ||||||||||||||||| ||||| | | ||||||| |||||||||||||||||    
T  3095064 tagaaattttgtgttggaaaatgataaaaaatagtcaaatcaacttgtaaaaagtttataaattattgtttctaatgtaaaagtactaattttggttacc 3095163  T
Q  572 ttaacc 577  Q
    ||||||    
T  3095164 ttaacc 3095169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 425 - 576
Target Start/End: Original strand, 32354707 - 32354858
Alignment:
Q  425 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaa 524  Q
    |||||||||||||||||  | || | ||||||||||| ||||||||||| ||| ||  || || | ||||||||||| | ||||||| ||||| ||||||    
T  32354707 ggaaatgctaaccattgttcatggggtattggataaaggaacaaaaataaaaaattcctgttgaaaaatgataaaaagtggtcaagtcaacttgtaaaaa 32354806  T
Q  525 gtttataaattgttgttaccactgtaaaaatactaattttggttaccttaac 576  Q
    ||||||||||| || ||  || ||||||| ||||||||||||||||||||||    
T  32354807 gtttataaattattatttacaatgtaaaattactaattttggttaccttaac 32354858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 452 - 577
Target Start/End: Complemental strand, 41464389 - 41464264
Alignment:
Q  452 attggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgtaa 551  Q
    |||| ||||| ||| ||||||||||||||| |  || | ||| |||||||   ||||||| ||||| ||||||||||||||||||||||| ||| |||||    
T  41464389 attgaataaaggaataaaaatagaaattttgtattgaaaaattataaaaagcggtcaagtcaacttgtaaaaagtttataaattgttgtttccaatgtaa 41464290  T
Q  552 aaatactaattttggttaccttaacc 577  Q
    | ||||||||||||||||||||||||    
T  41464289 agatactaattttggttaccttaacc 41464264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 491 - 575
Target Start/End: Complemental strand, 36402529 - 36402445
Alignment:
Q  491 aatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgtaaaaatactaattttggttaccttaa 575  Q
    |||||| |||| ||||||||||||||| ||||||||||||||||||||||| ||| | ||||| |||||||||||||||||||||    
T  36402529 aatgatcaaaagtagtcaagttaacttgtaaaaagtttataaattgttgtttccaatataaaactactaattttggttaccttaa 36402445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 425 - 575
Target Start/End: Complemental strand, 6084838 - 6084687
Alignment:
Q  425 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaat-agaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaa 523  Q
    |||||||||||||||||| |||  | ||||||||||| |||||||||| | ||| ||| |  || | ||||||||||| | ||||||| || || |||||    
T  6084838 ggaaatgctaaccattgcccttagggtattggataaaggaacaaaaattaaaaaatttgtattgaaaaatgataaaaagtggtcaagtcaatttgtaaaa 6084739  T
Q  524 agtttataaattgttgttaccactgtaaaaatactaattttggttaccttaa 575  Q
    |||||||||| | ||||| ||| ||||||  |||||||||| ||||||||||    
T  6084738 agtttataaaatattgtttccaatgtaaagctactaattttagttaccttaa 6084687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 452 - 569
Target Start/End: Complemental strand, 40356521 - 40356405
Alignment:
Q  452 attggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgtaa 551  Q
    |||||||||| |||||||||| ||||||||||| |  | ||||||||||| | || || |||| || || |||||||||||||||||||| ||| | |||    
T  40356521 attggataaaggaacaaaaat-gaaattttatgttaaaaaatgataaaaagtggttaaattaatttgtataaagtttataaattgttgtttccaatataa 40356423  T
Q  552 aaatactaattttggtta 569  Q
    |  |||||||||||||||    
T  40356422 agttactaattttggtta 40356405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 425 - 518
Target Start/End: Complemental strand, 5711257 - 5711164
Alignment:
Q  425 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaactta 518  Q
    ||||||| ||||||||||  || ||| ||| |||||| ||| ||||||| ||||||| || |||| ||||||||||||| ||||||| ||||||    
T  5711257 ggaaatgttaaccattgcctttaagacattagataaaggaataaaaataaaaattttgtgttggaaaatgataaaaaattgtcaagtcaactta 5711164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 17833163 - 17833100
Alignment:
Q  18 aatatagtcaaaattgaaacttgaatttacctcaagcactttcattccttagaggagtgtgtca 81  Q
    |||||||||||||||||||||||||||||| | ||| |||||||||| || || || |||||||    
T  17833163 aatatagtcaaaattgaaacttgaatttactttaagtactttcattcattggaagaatgtgtca 17833100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 524
Target Start/End: Complemental strand, 18904305 - 18904248
Alignment:
Q  467 aaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaa 524  Q
    ||||||||||||||| || |||| ||||||||||| |||| |||| ||||| ||||||    
T  18904305 aaaaatagaaattttgtgttggaaaatgataaaaagtagttaagtcaacttgtaaaaa 18904248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 425 - 577
Target Start/End: Complemental strand, 22616997 - 22616847
Alignment:
Q  425 ggaaatgctaaccattgcacttgagatattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaa 524  Q
    ||||||||||| |||||  |||| |  ||||||||||  |||||||||||||||| | |  |||| ||||||||||| ||||||| | ||||||||||||    
T  22616997 ggaaatgctaatcattgtccttggggcattggataaaataacaaaaatagaaattgtgt--tggaaaatgataaaaagtagtcaaatcaacttataaaaa 22616900  T
Q  525 gtttataaattgttgttaccactgtaaaaatactaattttggttaccttaacc 577  Q
    ||||||||||||||||| ||| ||||||| |||| ||||||||||||||||||    
T  22616899 gtttataaattgttgtttccaatgtaaaactactcattttggttaccttaacc 22616847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 452 - 575
Target Start/End: Original strand, 6614884 - 6615007
Alignment:
Q  452 attggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgtaa 551  Q
    |||||||||| ||||||||||||||||||| || |||| ||||||||||| | ||||| | ||||| ||||||||||||||||| ||||| | | |||||    
T  6614884 attggataaaggaacaaaaatagaaattttgtgttggaaaatgataaaaagtggtcaaatcaacttgtaaaaagtttataaattattgtttctagtgtaa 6614983  T
Q  552 aaatactaattttggttaccttaa 575  Q
    || |||||||||| ||||||||||    
T  6614984 aactactaattttagttaccttaa 6615007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 451 - 576
Target Start/End: Complemental strand, 31765899 - 31765774
Alignment:
Q  451 tattggataaatgaacaaaaatagaaattttatgctggagaatgataaaaaatagtcaagttaacttataaaaagtttataaattgttgttaccactgta 550  Q
    ||||||||||  ||| ||||||||||||| | || |||||| | ||||||||| ||||| | ||||| |||||||||||  |||| |||||  || ||||    
T  31765899 tattggataagggaataaaaatagaaattctgtgttggagagtaataaaaaatggtcaaatcaacttgtaaaaagtttacgaattattgttttcaatgta 31765800  T
Q  551 aaaatactaattttggttaccttaac 576  Q
    ||| ||||||||||| ||||||||||    
T  31765799 aaactactaattttgattaccttaac 31765774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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