View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21297_low_20 (Length: 277)

Name: NF21297_low_20
Description: NF21297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21297_low_20
NF21297_low_20
[»] chr8 (5 HSPs)
chr8 (16-261)||(16751646-16751891)
chr8 (118-199)||(16757835-16757916)
chr8 (24-89)||(36243430-36243495)
chr8 (40-89)||(27540687-27540736)
chr8 (200-249)||(2039989-2040038)
[»] chr7 (4 HSPs)
chr7 (198-261)||(8254378-8254441)
chr7 (201-250)||(23618700-23618749)
chr7 (217-261)||(8303433-8303477)
chr7 (210-250)||(25843011-25843051)
[»] chr3 (5 HSPs)
chr3 (23-89)||(14956467-14956533)
chr3 (200-248)||(19348373-19348421)
chr3 (200-261)||(18013813-18013874)
chr3 (202-261)||(22970619-22970678)
chr3 (200-250)||(3041093-3041139)
[»] chr2 (7 HSPs)
chr2 (200-261)||(20034470-20034531)
chr2 (200-261)||(27524355-27524416)
chr2 (30-89)||(31407770-31407829)
chr2 (197-250)||(34577697-34577750)
chr2 (200-250)||(974190-974240)
chr2 (199-237)||(7301679-7301717)
chr2 (221-261)||(41001770-41001810)
[»] chr4 (1 HSPs)
chr4 (30-89)||(14207552-14207611)
[»] chr1 (2 HSPs)
chr1 (201-255)||(17197771-17197825)
chr1 (200-261)||(4531-4592)
[»] scaffold0027 (1 HSPs)
scaffold0027 (200-261)||(133327-133388)
[»] scaffold0182 (1 HSPs)
scaffold0182 (200-255)||(24191-24246)
[»] scaffold0079 (1 HSPs)
scaffold0079 (200-250)||(15126-15176)


Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 261
Target Start/End: Original strand, 16751646 - 16751891
Alignment:
Q  16 atcatgtaaaaaggctattcaatcccatacttgaaattgtcttgaaccgttctttaagaatttgatgtattttacgcaaatcaaaccatattactttgtt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16751646 atcatgtaaaaaggctattcaatcccatacttgaaattgtcttgaaccgttctttaagaatttgatgtattttacgcaaatcaaaccatattactttgtt 16751745  T
Q  116 tattattgttttggcattgctatatatgcacgtttctaatttttatcttcatttttctttactttcaaagaaaatagttcgaatcattgttatcaaaaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16751746 tattattgttttggcattgctatatatgcacgtttctaatttttatcttcatttttctttactttcaaagaaaatagttcgaatcattgttataaaaaat 16751845  T
Q  216 ccgacttaagtctcaaaatcctggtttttgcgactatgcgaagctt 261  Q
    || ||||||||||||||||||| |||||||||||||||||||||||    
T  16751846 ccaacttaagtctcaaaatcctagtttttgcgactatgcgaagctt 16751891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 16757835 - 16757916
Alignment:
Q  118 ttattgttttggcattgctatatatgcacgtttctaatttttatcttcatttttctttactttcaaagaaaatagttcgaat 199  Q
    |||||| ||| |||||| |||||||||| |||||||||||| |||||||| |||||||||||| ||||||||||||| ||||    
T  16757835 ttattggtttagcattgttatatatgcatgtttctaattttgatcttcatctttctttacttttaaagaaaatagtttgaat 16757916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 36243495 - 36243430
Alignment:
Q  24 aaaaggctattcaatcccatacttgaaattgtcttgaaccgttctttaagaatttgatgtatttta 89  Q
    ||||||||||||||  ||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  36243495 aaaaggctattcaacaccatacttgaaattgtcttgaactgttcttaaagaatttgatgtatttta 36243430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 27540736 - 27540687
Alignment:
Q  40 ccatacttgaaattgtcttgaaccgttctttaagaatttgatgtatttta 89  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27540736 ccatacttgaaattgtcttaaaccgttctttaagaatttgatgtatttta 27540687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 2039989 - 2040038
Alignment:
Q  200 cattgttatcaaaaatccgacttaagtctcaaaatcctggtttttgcgac 249  Q
    ||||||||||||||| ||||||||||||||||||||||| |||| |||||    
T  2039989 cattgttatcaaaaacccgacttaagtctcaaaatcctgattttggcgac 2040038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 7e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 198 - 261
Target Start/End: Complemental strand, 8254441 - 8254378
Alignment:
Q  198 atcattgttatcaaaaatccgacttaagtctcaaaatcctggtttttgcgactatgcgaagctt 261  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||    
T  8254441 atcattgttatcaaaaacccgacttaagtctcaaaatcctggtttttgcgactttgcgtagctt 8254378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 250
Target Start/End: Complemental strand, 23618749 - 23618700
Alignment:
Q  201 attgttatcaaaaatccgacttaagtctcaaaatcctggtttttgcgact 250  Q
    |||||||||||||| | ||||||||||||||||||||||||| |||||||    
T  23618749 attgttatcaaaaacctgacttaagtctcaaaatcctggtttatgcgact 23618700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 8303433 - 8303477
Alignment:
Q  217 cgacttaagtctcaaaatcctggtttttgcgactatgcgaagctt 261  Q
    |||||||||||||||||| | ||||||||||||| |||| |||||    
T  8303433 cgacttaagtctcaaaattcaggtttttgcgactttgcgtagctt 8303477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 25843051 - 25843011
Alignment:
Q  210 aaaaatccgacttaagtctcaaaatcctggtttttgcgact 250  Q
    ||||| || ||||||||||||||||||| ||||||||||||    
T  25843051 aaaaacccaacttaagtctcaaaatcctagtttttgcgact 25843011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 14956533 - 14956467
Alignment:
Q  23 aaaaaggctattcaatcccatacttgaaattgtcttgaaccgttctttaagaatttgatgtatttta 89  Q
    ||||||||||||||| ||| ||||||||||||||||||| ||||||| |||||||||||||||||||    
T  14956533 aaaaaggctattcaaccccgtacttgaaattgtcttgaatcgttcttaaagaatttgatgtatttta 14956467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 19348373 - 19348421
Alignment:
Q  200 cattgttatcaaaaatccgacttaagtctcaaaatcctggtttttgcga 248  Q
    |||||||||||||||  ||||||||||| ||||||||||||||||||||    
T  19348373 cattgttatcaaaaacgcgacttaagtcccaaaatcctggtttttgcga 19348421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 18013813 - 18013874
Alignment:
Q  200 cattgttatcaaaaatccgacttaagtctcaaaatcctggtttttgcgactatgcgaagctt 261  Q
    ||||||||| |||||  ||||||||| | |||||||||||||||||||||| |||| |||||    
T  18013813 cattgttataaaaaacgcgacttaaggcccaaaatcctggtttttgcgactttgcgtagctt 18013874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 261
Target Start/End: Original strand, 22970619 - 22970678
Alignment:
Q  202 ttgttatcaaaaatccgacttaagtctcaaaatcctggtttttgcgactatgcgaagctt 261  Q
    |||||||| |||| || ||| |||||||||| ||||||||||||||||| |||| |||||    
T  22970619 ttgttatcgaaaacccaactgaagtctcaaattcctggtttttgcgactttgcgtagctt 22970678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 250
Target Start/End: Original strand, 3041093 - 3041139
Alignment:
Q  200 cattgttatcaaaaatccgacttaagtctcaaaatcctggtttttgcgact 250  Q
    ||||||||||||||| |||||||||||||    ||||||||||||||||||    
T  3041093 cattgttatcaaaaacccgacttaagtct----atcctggtttttgcgact 3041139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 20034531 - 20034470
Alignment:
Q  200 cattgttatcaaaaatccgacttaagtctcaaaatcctggtttttgcgactatgcgaagctt 261  Q
    ||||||||||||||| || |||||||||||||||||||||||||||||||| |||| |||||    
T  20034531 cattgttatcaaaaacccaacttaagtctcaaaatcctggtttttgcgactttgcgtagctt 20034470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 27524416 - 27524355
Alignment:
Q  200 cattgttatcaaaaatccgacttaagtctcaaaatcctggtttttgcgactatgcgaagctt 261  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| |||||    
T  27524416 cattgttatcaaaaacccgacttaagtctcaaaattctggtttttgcgactttgcgtagctt 27524355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 31407829 - 31407770
Alignment:
Q  30 ctattcaatcccatacttgaaattgtcttgaaccgttctttaagaatttgatgtatttta 89  Q
    |||| ||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  31407829 ctatgcaaccccatacttgaaattgccttgaaccgttctttaagaatttgatgcatttta 31407770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 34577697 - 34577750
Alignment:
Q  197 aatcattgttatcaaaaatccgacttaagtctcaaaatcctggtttttgcgact 250  Q
    |||| ||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  34577697 aatcgttgttatcaaaaacccgacttaagtcttaaaatcctggtttttgcgact 34577750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 250
Target Start/End: Original strand, 974190 - 974240
Alignment:
Q  200 cattgttatcaaaaatccgacttaagtctcaaaatcctggtttttgcgact 250  Q
    |||||||||||||||  |||||||||||  |||||||||||||||||||||    
T  974190 cattgttatcaaaaacgcgacttaagtcctaaaatcctggtttttgcgact 974240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 7301679 - 7301717
Alignment:
Q  199 tcattgttatcaaaaatccgacttaagtctcaaaatcct 237  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  7301679 tcattgttatcaaaaacccgacttaagtctcaaaatcct 7301717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 41001770 - 41001810
Alignment:
Q  221 ttaagtctcaaaatcctggtttttgcgactatgcgaagctt 261  Q
    |||||||||||||||||||||||||| ||| |||| |||||    
T  41001770 ttaagtctcaaaatcctggtttttgcaactttgcgtagctt 41001810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 14207611 - 14207552
Alignment:
Q  30 ctattcaatcccatacttgaaattgtcttgaaccgttctttaagaatttgatgtatttta 89  Q
    |||| ||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  14207611 ctatgcaaccccatacttgaaattgccttgaaccgttctttaagaatttgatgcatttta 14207552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 201 - 255
Target Start/End: Complemental strand, 17197825 - 17197771
Alignment:
Q  201 attgttatcaaaaatccgacttaagtctcaaaatcctggtttttgcgactatgcg 255  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||    
T  17197825 attgttatcaaaaacccgacttaagtctcaaaatcctggtttatgcgactttgcg 17197771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 4531 - 4592
Alignment:
Q  200 cattgttatcaaaaatccgacttaagtctcaaaatcctggtttttgcgactatgcgaagctt 261  Q
    ||||||||| |||||  ||||||||||||||||||  |||||||||||||| |||| |||||    
T  4531 cattgttataaaaaacgcgacttaagtctcaaaattttggtttttgcgactttgcgtagctt 4592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 133388 - 133327
Alignment:
Q  200 cattgttatcaaaaatccgacttaagtctcaaaatcctggtttttgcgactatgcgaagctt 261  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||| ||||| |||| |||||    
T  133388 cattgttatcaaaaacccgacttaagtcttaaaatcctggtttttacgactttgcgtagctt 133327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 24191 - 24246
Alignment:
Q  200 cattgttatcaaaaatccgacttaagtctcaaaatcctggtttttgcgactatgcg 255  Q
    |||||||||||||||  ||||||||||||||||||||||||| |||||||| ||||    
T  24191 cattgttatcaaaaacacgacttaagtctcaaaatcctggttcttgcgactttgcg 24246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 250
Target Start/End: Complemental strand, 15176 - 15126
Alignment:
Q  200 cattgttatcaaaaatccgacttaagtctcaaaatcctggtttttgcgact 250  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||| ||||    
T  15176 cattgttatcaaaaacccgacttaagtctcaaaattctggtttttgtgact 15126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University