View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21297_low_30 (Length: 237)
Name: NF21297_low_30
Description: NF21297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21297_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 49 - 222
Target Start/End: Original strand, 38759356 - 38759529
Alignment:
| Q |
49 |
agtggattagactgatattcatcctctgaaaatacagttgatgaattgaattatatttatttttgttaaagaatttgtagttgatttttaatgtattaat |
148 |
Q |
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| T |
38759356 |
agtggattagactgatattcatcctctgaaaatatcgttgatggattgaattatatttatttttgttaaagaatttgtagttgatttttaatgtattaat |
38759455 |
T |
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| Q |
149 |
aaactattttattcattcattttaagtgcaattgaataagataaggatttcgtagtaaaaaagacgagggtatt |
222 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38759456 |
aaactattttattcattcattttatgtgcaattgaataagataaggatttcgtagtaaaaaagacgagggtatt |
38759529 |
T |
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