View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21297_low_4 (Length: 526)
Name: NF21297_low_4
Description: NF21297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21297_low_4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 280 - 526
Target Start/End: Original strand, 2638027 - 2638274
Alignment:
| Q |
280 |
tggttcggtttcatttcatgcgaaattggtgattttgcctaaa-ctaacacaatgaacaaatagattgattatgatttggtttgttcatattataaaaaa |
378 |
Q |
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| T |
2638027 |
tggttcggtttcatttcatacgaaattgatgattttgcctaaaactaacacaatgaaaaaatagattgattatggtttggtttgttcatattataaaaaa |
2638126 |
T |
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| Q |
379 |
gtgagaaattgcaacaacaacaaaaaagttataaacgtgtgcctctgccctccgctacctgcttcaatttatttgataatgaatcaattagaactcaagg |
478 |
Q |
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| T |
2638127 |
gtgagaaattgcaacaacaa-aaaaaagttataaacgtgtgcctctgccctctgctacctgcttcaatttatttgataatgaatcaattaaaactcaagg |
2638225 |
T |
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| Q |
479 |
aaaac-aaaaaatttgttaatgaattaagcaaaggacaaatcgatgaac |
526 |
Q |
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| T |
2638226 |
aaaacaaaaaaaattattaatgaattaagcaaaggacagatcgatgaac |
2638274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 2637733 - 2637927
Alignment:
| Q |
16 |
catgtataatgctccaatatcatgtaaactttttctgcttaaataacattttactgtcagctagtgagctttagnnnnnnntattttgaagtttcaatta |
115 |
Q |
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| T |
2637733 |
catgtataatgctccaatatcatgtaaactttttctgcttaaataacattttactgccagctagtgagctttagaaaaaaatatt--gaagtttcaatta |
2637830 |
T |
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| Q |
116 |
aaaaactaagtaatttttcaaagtttatgggacccttcattagagtgtaacatgttgttcacgtaaacttaactcgattggtaagaataatgaataa |
212 |
Q |
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| T |
2637831 |
aaaaactaagtaattttttaaagtttctgggacccttcattagagtgtaacatgttgtacacgtaaacttaactcggttggtaacgataatgaataa |
2637927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 225 - 253
Target Start/End: Original strand, 24914270 - 24914298
Alignment:
| Q |
225 |
acaggttgggttgggttgggttgggttgg |
253 |
Q |
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| T |
24914270 |
acaggttgggttgggttgggttgggttgg |
24914298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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