View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21297_low_5 (Length: 516)
Name: NF21297_low_5
Description: NF21297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21297_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 3e-89; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 202 - 376
Target Start/End: Complemental strand, 23434110 - 23433936
Alignment:
| Q |
202 |
acacatgattacgcattcctacttcttggttcttccctgcaatttctcccaacaagctgggatacccacaaacataataatagttatcttacaaaataac |
301 |
Q |
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| T |
23434110 |
acacatgattacgcattcctacttcttggttcttccctgcaatttctcccaacaagctgggatacccgcaaacataataatagttatcttacaaaataac |
23434011 |
T |
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| Q |
302 |
tataaaacttttgattaattaaagaccctttatttctttaactctagaactagttgaatctcattatgttcttct |
376 |
Q |
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| T |
23434010 |
tataaaacttttgattaattaaagaccctttatttctttaactctagaactggttgaatctcattatgttcttct |
23433936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 23434292 - 23434180
Alignment:
| Q |
24 |
agatacacatcaacggttagcatttaattagtcactacaaattgagtcacactctatcccttaatcttcatctccctcaatgacattttctccacacatt |
123 |
Q |
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| T |
23434292 |
agatacacatcaacggttagcatttaattagtcactacaaattgagtcacactctatcccttaatcttcatctccctcaatggcattttctccacacatt |
23434193 |
T |
|
| Q |
124 |
cacgttccagttt |
136 |
Q |
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|||||||| |||| |
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| T |
23434192 |
cacgttcctgttt |
23434180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 443 - 504
Target Start/End: Complemental strand, 23433869 - 23433808
Alignment:
| Q |
443 |
cacaagcttaatctcattctattcttcggggtttttggggttagttttgtttgcttaatatt |
504 |
Q |
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| T |
23433869 |
cacaagcttaatctcattctattcttcggggtttctggggttagttttgtttgcttaatatt |
23433808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 19638840 - 19638754
Alignment:
| Q |
32 |
atcaacggttagcatttaattagtcactacaaattgagtcacactctatcccttaatcttcatctccctcaatgacattttctccac |
118 |
Q |
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| T |
19638840 |
atcaacggttggcatttagttagtcactacagacttagtcacactgtatccctcaatcttcatctcccttcctgacatattctccac |
19638754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 20509353 - 20509267
Alignment:
| Q |
32 |
atcaacggttagcatttaattagtcactacaaattgagtcacactctatcccttaatcttcatctccctcaatgacattttctccac |
118 |
Q |
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| T |
20509353 |
atcaacggttggcatttagttagtcactacagacttagtcacactgtatccctcaatcttcatctcccttcctgacatattctccac |
20509267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 14099223 - 14099137
Alignment:
| Q |
32 |
atcaacggttagcatttaattagtcactacaaattgagtcacactctatcccttaatcttcatctccctcaatgacattttctccac |
118 |
Q |
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|||||||||| ||||||| |||||||||||| | | ||||||||| ||||||| ||||||||||||||| |||||| |||||||| |
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| T |
14099223 |
atcaacggttggcatttagttagtcactacagacttagtcacactgtatccctcaatcttcatctcccttcctgacatattctccac |
14099137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 30785613 - 30785527
Alignment:
| Q |
32 |
atcaacggttagcatttaattagtcactacaaattgagtcacactctatcccttaatcttcatctccctcaatgacattttctccac |
118 |
Q |
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|||||||||| |||||| |||||||||||| | | ||||||||| ||||||| ||||||||||||||| |||||| |||||||| |
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| T |
30785613 |
atcaacggttgacatttagttagtcactacagacttagtcacactatatccctcaatcttcatctcccttcctgacatattctccac |
30785527 |
T |
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