View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21297_low_7 (Length: 427)
Name: NF21297_low_7
Description: NF21297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21297_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 17284255 - 17283843
Alignment:
| Q |
1 |
acagtgtgaggaaggattcacggtttggtggcttttgtacggatcaagtcgaacagtctaggtttcggtttgccaatggtcatcgggtttcagaagcttc |
100 |
Q |
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| T |
17284255 |
acagtgtgaggaaggattcacggtttggtggctttcgtacggattaagtcgaacagtctaggtttcggtttgccaatggtcatcgggtttcagaagcttc |
17284156 |
T |
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| Q |
101 |
acgaggcaagaattttggtggtgcaaggttgaaggtatggttttcggttgcaagggagaaggttcgacatgattacagcgacaaggatgatggtgtttct |
200 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
17284155 |
acgaggcaaaaattttggtggtgcaaggttgaaggtatggttttcggttgcaagggagaaggttcgacatgattaaaacgacaaggatgatggtgtttct |
17284056 |
T |
|
| Q |
201 |
gcgcgacgttagaatgtcatccaggcagcgcgtgcttcttccatggcttcttcaagaaagtggaatgttgacgttggtattggtagttgtgtggttcaac |
300 |
Q |
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||||||| ||||||||||||||||||||| |||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17284055 |
gcgcgaccttagaatgtcatccaggcagcccgtgcttcttccatggctgctccaagaaagtgggatgttgacgttggtattggtagttgtgtggttcaac |
17283956 |
T |
|
| Q |
301 |
cgggtaatagtgttaaaaggttggtatccttctattttacgaatgtgccgaaattgattccttaattttacatgtggagaaaatttgaggtttgcaggat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17283955 |
cgggtaatagtgttaaaaggttggtatccttctattttacgaatgtgccgaaattgattccttaattttacatgtggagaaaatttgaggtttgcgggat |
17283856 |
T |
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| Q |
401 |
gttagatgatgtc |
413 |
Q |
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| T |
17283855 |
gttagatgatgtc |
17283843 |
T |
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