View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21297_low_8 (Length: 386)

Name: NF21297_low_8
Description: NF21297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21297_low_8
NF21297_low_8
[»] chr5 (7 HSPs)
chr5 (18-370)||(11905910-11906262)
chr5 (18-54)||(6243232-6243268)
chr5 (25-60)||(26716275-26716310)
chr5 (25-60)||(26986015-26986050)
chr5 (25-60)||(30918380-30918415)
chr5 (19-53)||(5612517-5612551)
chr5 (25-54)||(27938171-27938200)
[»] chr2 (3 HSPs)
chr2 (18-60)||(4355327-4355369)
chr2 (25-65)||(3563848-3563888)
chr2 (25-54)||(14217235-14217264)
[»] chr8 (3 HSPs)
chr8 (18-54)||(27886198-27886234)
chr8 (18-54)||(27944856-27944892)
chr8 (31-60)||(32759375-32759404)
[»] chr3 (7 HSPs)
chr3 (25-60)||(2122706-2122741)
chr3 (25-60)||(22289802-22289837)
chr3 (19-54)||(41742147-41742182)
chr3 (19-53)||(21157804-21157838)
chr3 (18-60)||(42464981-42465023)
chr3 (134-200)||(52027661-52027727)
chr3 (31-60)||(47642019-47642048)
[»] chr7 (1 HSPs)
chr7 (18-60)||(38262998-38263040)
[»] chr1 (4 HSPs)
chr1 (30-60)||(10822404-10822434)
chr1 (25-54)||(34432464-34432493)
chr1 (18-54)||(3708353-3708389)
chr1 (30-62)||(29167947-29167979)
[»] chr6 (1 HSPs)
chr6 (23-60)||(3212479-3212516)
[»] chr4 (1 HSPs)
chr4 (18-54)||(42472643-42472679)


Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Complemental strand, 11906262 - 11905910
Alignment:
Q  18 gcagagaatacaatacgtcatccattttgaagtatcgaggctttagataaatatgtaagaaatgagtttatttgacatgttgattggtgtaaaagatata 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11906262 gcagggaatacaatacgtcatccattttgaagtatcgaggctttagataaatatgtaagaaatgagtttatttgacatgttgattggtgtaaaagatata 11906163  T
Q  118 tgaaagaaatatagaggaaataaatgttgattattttgaaagtatgaaattaccattgaatcataaaaattccattaaaattaataaattttagaatgtt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11906162 tgaaagaaatatagaggaaataaatgttgattattttgaaagtatgaaattaccattgaatcataaaaattccattaaaattaataaattttagaatgtt 11906063  T
Q  218 tttaattaaggaaacattatttgaggaactgattggtggctgagtgtatgttttgcagtcatatagaggtgctgagtatatgagtttatatttccatcaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11906062 tttaattaaggaaacattatttgaggaactgattggtggctgagtgtatgttttgcagtcatatagaggtgctgagtatatgagtttatatttccatcaa 11905963  T
Q  318 ttttcattgatattttggttccagaggctaggactggttggttgttttctatt 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11905962 ttttcattgatattttggttccagaggctaggactggttggttgttttctatt 11905910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 6243232 - 6243268
Alignment:
Q  18 gcagagaatacaatacgtcatccattttgaagtatcg 54  Q
    |||||| ||||||||||||||||||||||||||||||    
T  6243232 gcagaggatacaatacgtcatccattttgaagtatcg 6243268  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 26716310 - 26716275
Alignment:
Q  25 atacaatacgtcatccattttgaagtatcgaggctt 60  Q
    |||| |||||||||||||||||||||||||||||||    
T  26716310 atacgatacgtcatccattttgaagtatcgaggctt 26716275  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 26986050 - 26986015
Alignment:
Q  25 atacaatacgtcatccattttgaagtatcgaggctt 60  Q
    |||| |||||||||||||||||||||||||||||||    
T  26986050 atacgatacgtcatccattttgaagtatcgaggctt 26986015  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 30918415 - 30918380
Alignment:
Q  25 atacaatacgtcatccattttgaagtatcgaggctt 60  Q
    |||||||||||||||||||||||||||||| |||||    
T  30918415 atacaatacgtcatccattttgaagtatcggggctt 30918380  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 5612517 - 5612551
Alignment:
Q  19 cagagaatacaatacgtcatccattttgaagtatc 53  Q
    |||||||||| ||||||||||||||||||||||||    
T  5612517 cagagaatacgatacgtcatccattttgaagtatc 5612551  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 27938200 - 27938171
Alignment:
Q  25 atacaatacgtcatccattttgaagtatcg 54  Q
    ||||||||||||||||||||||||||||||    
T  27938200 atacaatacgtcatccattttgaagtatcg 27938171  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 4355369 - 4355327
Alignment:
Q  18 gcagagaatacaatacgtcatccattttgaagtatcgaggctt 60  Q
    |||| |||||| |||||||||||||||||||||||||||||||    
T  4355369 gcagggaatacgatacgtcatccattttgaagtatcgaggctt 4355327  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 3563888 - 3563848
Alignment:
Q  25 atacaatacgtcatccattttgaagtatcgaggctttagat 65  Q
    |||||||||||||||||||||||||||||| ||||| ||||    
T  3563888 atacaatacgtcatccattttgaagtatcggggcttcagat 3563848  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 14217235 - 14217264
Alignment:
Q  25 atacaatacgtcatccattttgaagtatcg 54  Q
    ||||||||||||||||||||||||||||||    
T  14217235 atacaatacgtcatccattttgaagtatcg 14217264  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 27886234 - 27886198
Alignment:
Q  18 gcagagaatacaatacgtcatccattttgaagtatcg 54  Q
    |||| ||||||||||||||||||||||||||||||||    
T  27886234 gcagggaatacaatacgtcatccattttgaagtatcg 27886198  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 27944892 - 27944856
Alignment:
Q  18 gcagagaatacaatacgtcatccattttgaagtatcg 54  Q
    |||| ||||||||||||||||||||||||||||||||    
T  27944892 gcagggaatacaatacgtcatccattttgaagtatcg 27944856  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 60
Target Start/End: Complemental strand, 32759404 - 32759375
Alignment:
Q  31 tacgtcatccattttgaagtatcgaggctt 60  Q
    ||||||||||||||||||||||||||||||    
T  32759404 tacgtcatccattttgaagtatcgaggctt 32759375  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 2122741 - 2122706
Alignment:
Q  25 atacaatacgtcatccattttgaagtatcgaggctt 60  Q
    |||||||||||||||||||||||||||||| |||||    
T  2122741 atacaatacgtcatccattttgaagtatcggggctt 2122706  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 22289802 - 22289837
Alignment:
Q  25 atacaatacgtcatccattttgaagtatcgaggctt 60  Q
    |||| |||||||||||||||||||||||||||||||    
T  22289802 atacgatacgtcatccattttgaagtatcgaggctt 22289837  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 41742147 - 41742182
Alignment:
Q  19 cagagaatacaatacgtcatccattttgaagtatcg 54  Q
    ||||| ||||||||||||||||||||||||||||||    
T  41742147 cagaggatacaatacgtcatccattttgaagtatcg 41742182  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 21157804 - 21157838
Alignment:
Q  19 cagagaatacaatacgtcatccattttgaagtatc 53  Q
    |||||||||| ||||||||||||||||||||||||    
T  21157804 cagagaatacgatacgtcatccattttgaagtatc 21157838  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 42464981 - 42465023
Alignment:
Q  18 gcagagaatacaatacgtcatccattttgaagtatcgaggctt 60  Q
    |||||| ||||| |||||||||||||||||||||||| |||||    
T  42464981 gcagaggatacagtacgtcatccattttgaagtatcggggctt 42465023  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 200
Target Start/End: Complemental strand, 52027727 - 52027661
Alignment:
Q  134 gaaataaatgttgattattttgaaagtatgaaattaccattgaatcataaaaattccattaaaatta 200  Q
    ||||||| ||||||||||||||||||||  ||| ||   |||||| ||||||||||||| |||||||    
T  52027727 gaaataagtgttgattattttgaaagtaccaaaatattcttgaataataaaaattccatcaaaatta 52027661  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 60
Target Start/End: Complemental strand, 47642048 - 47642019
Alignment:
Q  31 tacgtcatccattttgaagtatcgaggctt 60  Q
    ||||||||||||||||||||||||||||||    
T  47642048 tacgtcatccattttgaagtatcgaggctt 47642019  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 38263040 - 38262998
Alignment:
Q  18 gcagagaatacaatacgtcatccattttgaagtatcgaggctt 60  Q
    |||||||||||  |||||||||||||||||||||||| |||||    
T  38263040 gcagagaatacggtacgtcatccattttgaagtatcggggctt 38262998  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 60
Target Start/End: Complemental strand, 10822434 - 10822404
Alignment:
Q  30 atacgtcatccattttgaagtatcgaggctt 60  Q
    |||||||||||||||||||||||||||||||    
T  10822434 atacgtcatccattttgaagtatcgaggctt 10822404  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 34432464 - 34432493
Alignment:
Q  25 atacaatacgtcatccattttgaagtatcg 54  Q
    ||||||||||||||||||||||||||||||    
T  34432464 atacaatacgtcatccattttgaagtatcg 34432493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 3708353 - 3708389
Alignment:
Q  18 gcagagaatacaatacgtcatccattttgaagtatcg 54  Q
    |||||| |||| |||||||||||||||||||||||||    
T  3708353 gcagaggatacgatacgtcatccattttgaagtatcg 3708389  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 29167979 - 29167947
Alignment:
Q  30 atacgtcatccattttgaagtatcgaggcttta 62  Q
    ||||||||||||||||||||||| |||||||||    
T  29167979 atacgtcatccattttgaagtatggaggcttta 29167947  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 3212516 - 3212479
Alignment:
Q  23 gaatacaatacgtcatccattttgaagtatcgaggctt 60  Q
    |||||| ||||||||||||||||||||||||| |||||    
T  3212516 gaatacgatacgtcatccattttgaagtatcggggctt 3212479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 42472643 - 42472679
Alignment:
Q  18 gcagagaatacaatacgtcatccattttgaagtatcg 54  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  42472643 gcagggaatacagtacgtcatccattttgaagtatcg 42472679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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