View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21297_low_9 (Length: 373)
Name: NF21297_low_9
Description: NF21297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21297_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 45439854 - 45439650
Alignment:
| Q |
8 |
agtagcaaagggcatttatgattaaactaactgaataaattattcctctgtcaagaaaatgatggccaacctttagaatcttgaattgggtaaagtgttg |
107 |
Q |
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| T |
45439854 |
agtatcaaagggcattaatgattaaactaactgaataaattattcctctgtcaagaaaatgatggccaacctttagaatcttgaattgggtaaagtgttg |
45439755 |
T |
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| Q |
108 |
gttgcacaactttctttattgtcatattgagtactctcaaagatagtatggtgagagaagatcatgcaagttcaaagagaagattctttgtatgcaaagt |
207 |
Q |
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| T |
45439754 |
gttgcacaactttctttattgtcattttgagtactctcaaagatagtatggtgagagaagatcatgcaagttcaaagagaagattctttgtatgcaaagt |
45439655 |
T |
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| Q |
208 |
aataa |
212 |
Q |
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||||| |
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| T |
45439654 |
aataa |
45439650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 218 - 354
Target Start/End: Complemental strand, 45439622 - 45439484
Alignment:
| Q |
218 |
ttaaattgttccgagtaaaattgaactcaattttt--aataagattttcattttaaaatttgtgaatggaaaaaatggatagaaggaaaaactcactaaa |
315 |
Q |
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|||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45439622 |
ttaaattgttccgagtgaaattgaactcattttttttaataagattttcattttaaaatttgtgaatggaaaaaatggatagaaggaaaaactcactaaa |
45439523 |
T |
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| Q |
316 |
agtgacatacacaattttccggtacagattagtcattac |
354 |
Q |
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| T |
45439522 |
agtgacatacacaattttccggtacagattagtcattac |
45439484 |
T |
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