View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21298_low_11 (Length: 297)
Name: NF21298_low_11
Description: NF21298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21298_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 6e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 9 - 197
Target Start/End: Complemental strand, 42600480 - 42600288
Alignment:
| Q |
9 |
gagatgaatgatgccttaaatatcacaatagcaacacattacgtatgcatatttgaaatataaactttacttcatgcaaatattgtctcattcatatcaa |
108 |
Q |
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| T |
42600480 |
gagatgaatgatgccttaaatatcacaatag--acacattaagtatgcatatttgaaatctaaactttacttcatgcaaatattgtctcattcagatcaa |
42600383 |
T |
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| Q |
109 |
aacttaaaccacctgtgctcttttc------tattgacatacattctaaaagtctatcaagtggtaacaaagccaccttagaaatgtcaactcct |
197 |
Q |
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| T |
42600382 |
aatttaaaccacctgtgttcttttctattcttattgacatacattctaaaagtctatcaagtggtaacaaagccaccttagaaatgtcaactcct |
42600288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 182 - 282
Target Start/End: Complemental strand, 42600271 - 42600171
Alignment:
| Q |
182 |
agaaatgtcaactcctactactacttctgaaagagattggcgtaactgggttgaattgcatgatagccaaagatattgttgacattggtaaatttattaa |
281 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42600271 |
agaaatgtcaacacctactactacttctgaaagagattggcgtaattgggttgaattgcatgatagccaaagatattgttgacattggtaaatttattaa |
42600172 |
T |
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| Q |
282 |
t |
282 |
Q |
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| T |
42600171 |
t |
42600171 |
T |
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