View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21298_low_12 (Length: 291)
Name: NF21298_low_12
Description: NF21298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21298_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 42010096 - 42009828
Alignment:
| Q |
19 |
acactcctcagctctgcggtttaaggactcatattcctccctcgagatagtaattctagcaccggattcagtcgttgaagcgtgagcagtattattcctt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42010096 |
acactcctcagctctgcggtttaaggactcatattcctccctcgagatggtaattctagcaccggattcagtcgttgaagcgtgagcagtattattcctt |
42009997 |
T |
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| Q |
119 |
tcagataagtctctgatctgatcaagaatacggtcctctgctgcttttgccacttctgcttcttctaatgctagtttaagcttcatttctgcatctttta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42009996 |
tcagataagtctctgatctgatcaagaatacggtcctctgctgcttttgccacttctgcttcttctaatgctagtttaagcttcatttctgcatctttta |
42009897 |
T |
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| Q |
219 |
atgcatgttttgtgacttcagcttccaccttcaattcgattgcattgatcttcatatcttctgcttctc |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42009896 |
atgcatgttttgtgacttcagcttccaccttcaattcgattgcattgatcttcatatcttctgcttctc |
42009828 |
T |
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Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 1245434 - 1245166
Alignment:
| Q |
19 |
acactcctcagctctgcggtttaaggactcatattcctccctcgagatagtaattctagcaccggattcagtcgttgaagcgtgagcagtattattcctt |
118 |
Q |
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|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245434 |
acactcctcagctctgcagtttaaggactcatattcctccctcgagatagtaattctagcaccggattcagtcgttgaagcgtgagcagtattattcctt |
1245335 |
T |
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| Q |
119 |
tcagataagtctctgatctgatcaagaatacggtcctctgctgcttttgccacttctgcttcttctaatgctagtttaagcttcatttctgcatctttta |
218 |
Q |
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|| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1245334 |
tcggataagtctctgatctgatcatgaatacggtcctctgctgcttttgccgcttctgcttcttctaatgctagtttgagcttcatttctgcatctttta |
1245235 |
T |
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| Q |
219 |
atgcatgttttgtgacttcagcttccaccttcaattcgattgcattgatcttcatatcttctgcttctc |
287 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1245234 |
atgcatgtttggtgacttcagcttccaccttcaattcgattgcattgatcttcatatcttctgcttctc |
1245166 |
T |
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