View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21298_low_15 (Length: 261)
Name: NF21298_low_15
Description: NF21298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21298_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 18265015 - 18265273
Alignment:
| Q |
1 |
cactagaagcaatatgcttgacatccaatacatttggattccaagagacccaaattctaccattagcggcactatcataattattaagcactggccacct |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18265015 |
cactagaagcaataggcttgacatccaatacatttggattccaagagacccaaattctaccattagcggcactatcataattattaagcactggccacct |
18265114 |
T |
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| Q |
101 |
cttaaaaatcagactagaaattttattaaacttttcagctttaactctagtttctactaaaatacacatatcaaacttatttttaagcaaaaagtttttg |
200 |
Q |
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||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18265115 |
cttaaaaatcatactagaaattttattaaacttgtcagctttaactctagtttctactaaaatacacatatcaaacttatttttaagcaaaaagtttttg |
18265214 |
T |
|
| Q |
201 |
atttctttttgcttgaagggctgggtacaacccctcacatgccaacactctagtttcat |
259 |
Q |
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|||||||||||||||||||||| | ||||||||||||||| ||||||| |||||||||| |
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| T |
18265215 |
atttctttttgcttgaagggcttgttacaacccctcacattccaacacactagtttcat |
18265273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 33634279 - 33634537
Alignment:
| Q |
1 |
cactagaagcaatatgcttgacatccaatacatttggattccaagagacccaaattctaccattagcggcactatcataattattaagcactggccacct |
100 |
Q |
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|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33634279 |
cactagaagcaataggcttgacatccaatacagttggattccaagagacccaaattctaccattagcggcactatcataattattaagcactggccacct |
33634378 |
T |
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| Q |
101 |
cttaaaaatcagactagaaattttattaaacttttcagctttaactctagtttctactaaaatacacatatcaaacttatttttaagcaaaaagtttttg |
200 |
Q |
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| T |
33634379 |
cttaaaaatcatactagaaattttattaaacttgtcagctttaattctagtttctactaaaatacacatatcaaacttatttttaagcaaaaagtttttg |
33634478 |
T |
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| Q |
201 |
atttctttttgcttgaagggctgggtacaacccctcacatgccaacactctagtttcat |
259 |
Q |
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|||||||||||||||||||||| | ||||||||||||||| ||||||| |||||||||| |
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| T |
33634479 |
atttctttttgcttgaagggcttgttacaacccctcacattccaacacactagtttcat |
33634537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 3941047 - 3941305
Alignment:
| Q |
1 |
cactagaagcaatatgcttgacatccaatacatttggattccaagagacccaaattctaccattagcggcactatcataattattaagcactggccacct |
100 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3941047 |
cactagaagcaataggcttgacatccaatacatttggattccaagagacccaaattctaccattagcggcactatcataattattaagcactggccacct |
3941146 |
T |
|
| Q |
101 |
cttaaaaatcagactagaaattttattaaacttttcagctttaactctagtttctactaaaatacacatatcaaacttatttttaagcaaaaagtttttg |
200 |
Q |
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||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3941147 |
cttaaaaatcatactagaaattttattaaacttgttagctttaactctagtttctactaaaatacacatatcaaacttatttttaagcaaaaagtttttg |
3941246 |
T |
|
| Q |
201 |
atttctttttgcttgaagggctgggtacaacccctcacatgccaacactctagtttcat |
259 |
Q |
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|||||||||||||||||||||| | ||||||||||||||| ||||||| |||||||||| |
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| T |
3941247 |
atttctttttgcttgaagggcttgttacaacccctcacattccaacacactagtttcat |
3941305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 35169241 - 35169330
Alignment:
| Q |
1 |
cactagaagcaatatgcttgacatccaatacatttggattccaagagacccaaattctaccattagcggcactatcataattattaagca |
90 |
Q |
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|||||||||||| | | |||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
35169241 |
cactagaagcaacaggtttgagatccaatacatttggattccaagagacccaaattcttccattagaggcactatcataattattaagca |
35169330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 222
Target Start/End: Complemental strand, 40950540 - 40950450
Alignment:
| Q |
132 |
ttttcagctttaactctagtttctactaaaatacacatatcaaacttatttttaagcaaaaagtttttgatttctttttgcttgaagggct |
222 |
Q |
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||||||||||||||||||||||| | |||| ||| || ||||| ||||| ||| |||| |||||||| |||||||||||||||||||||| |
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| T |
40950540 |
ttttcagctttaactctagtttcaagcaaaacacaaatttcaaatttattcttatgcaataagtttttaatttctttttgcttgaagggct |
40950450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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