View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21298_low_17 (Length: 250)
Name: NF21298_low_17
Description: NF21298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21298_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 33252274 - 33252505
Alignment:
| Q |
4 |
agtggtctcgctggcgttaatcaatgacaatcggacaatgatccattaataaaacttgatacaattcaacagactcgacatatttcacctcgaaaccaca |
103 |
Q |
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| T |
33252274 |
agtggtctcgctggcgtcaatcaatgacaatcggacaat-------taataaaacttgatacaattcaacaggctcaacatatttcacctcgaaaccaca |
33252366 |
T |
|
| Q |
104 |
tgaaaacctaatgcaagttaaaggtgcactacttttaacccttaaaattccacacatttgatcacaaactaatttgaccgcaagagtatttgcaaaaaca |
203 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33252367 |
tgaaaacctaatgcaagttaaaggtgcattacttttaacccttaaaattccacacatttgatcacaaactaatttgaccgcaagagtatttgcagaaaca |
33252466 |
T |
|
| Q |
204 |
tcatcccctttgagcaactactgtcatcctccctatgct |
242 |
Q |
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|||||||||||||||||||| |||||||||||| ||||| |
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| T |
33252467 |
tcatcccctttgagcaactattgtcatcctccccatgct |
33252505 |
T |
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