View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21298_low_2 (Length: 629)
Name: NF21298_low_2
Description: NF21298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21298_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 570; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 12 - 613
Target Start/End: Complemental strand, 581180 - 580579
Alignment:
| Q |
12 |
agaacctgtgccttttgaagcaaggttaagagaatatcaacactaacaaatccaacctccaaatgggtcaacattggaaatacacatagcttttttggta |
111 |
Q |
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| T |
581180 |
agaaccggtgccttttgaagcaaggttaagagaatatcaacactaacgaagccaacctccaaatgggtcaacattggaaatacacatagcttttttggta |
581081 |
T |
|
| Q |
112 |
gcatctttttcagatccagaacctggaatggatgacgcaacgaaactgatttatattataacaaaaggattaaactcataaatatttatcctacttgtgc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
581080 |
gcatctttttcagatccagaacctggaatggatgacacaacgaaactgatttatattacaacaaaaggattaaactcataaatatttatcctacttgtga |
580981 |
T |
|
| Q |
212 |
tacattattataaaaataaattacttcaagatcatgacattcattgttaaaaacactaaagaataatatacttacctttgatgattcgaatttgatagat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
580980 |
tacattattataaaaataaattacttcaagatcatgacattcattgttaaaaacactaaagaataatatacttacctttgatgactcgaatttgatagat |
580881 |
T |
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| Q |
312 |
tttgagtgactgaattcaccaagaagtgcagcagcatggaaatctgacatataacttacaaagtgttggctctcatataaattgattttagccgaagcat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
580880 |
tttgagtgactgaattcaccaagaagtgcagcagcatggaaatctgacatataacttacaaagtgttggctctcatataaattgattttagctgaagcat |
580781 |
T |
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| Q |
412 |
ggcatggggacttaattataatgttttgtgatatatcaaaaccgcaaaaactgaattctttcagatcctcagaatcagggaagcagataaatgatttgtc |
511 |
Q |
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| T |
580780 |
ggcatggggacttaattataatgttttgtgatatatcaaaaccgcaaaaactgaattctttcagatcctcagaatcagggaagcagataaatgatttgtc |
580681 |
T |
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| Q |
512 |
acgtttacaaggaacaccgacgctatgttcgattgaaatgctttcaagtagaggcgcgtatatcataaccaaagatgtatcaacaaaccaagcgcagttt |
611 |
Q |
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| T |
580680 |
acgtttacaaggaacaccgacgctatgttcgattgaaatgctttcaagtagaggcgcgtatatcataaccaaagatgtatcaacaaaccaagcgcagttt |
580581 |
T |
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| Q |
612 |
tt |
613 |
Q |
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| T |
580580 |
tt |
580579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 1214828 - 1214741
Alignment:
| Q |
12 |
agaacctgtgccttttgaagcaaggttaagagaatatcaacactaacaaatccaacctccaaatgggtcaacattggaaatacacata |
99 |
Q |
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| T |
1214828 |
agaaccggtgtcttttcaagcaaggctaacagaatatcaacactaagtaagccaacatccaaatgggccaacattggaaatacacata |
1214741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 23 - 116
Target Start/End: Complemental strand, 1207609 - 1207516
Alignment:
| Q |
23 |
cttttgaagcaaggttaagagaatatcaacactaacaaatccaacctccaaatgggtcaacattggaaatacacatagcttttttggtagcatc |
116 |
Q |
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| T |
1207609 |
cttttgaagtaatgctaagagaatttcgacactaactaagccaacctccaaatcggtcaacattggaaatacgcacagctcttttggttgcatc |
1207516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 39 - 100
Target Start/End: Complemental strand, 1201412 - 1201351
Alignment:
| Q |
39 |
aagagaatatcaacactaacaaatccaacctccaaatgggtcaacattggaaatacacatag |
100 |
Q |
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| T |
1201412 |
aagagattatcaacactaatcaagccaacctccaaatgtgtcaacgttgaaaatacacatag |
1201351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 446
Target Start/End: Complemental strand, 1214381 - 1214316
Alignment:
| Q |
381 |
ctctcatataaattgattttagccgaagcatggcatggggacttaattataatgttttgtgatata |
446 |
Q |
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| T |
1214381 |
ctctcatgtaaaatgattttagtagaagcatggcatggggacgtcattaaaatgtgttgtggtata |
1214316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 23 - 103
Target Start/End: Original strand, 8188771 - 8188851
Alignment:
| Q |
23 |
cttttgaagcaaggttaagagaatatcaacactaacaaatccaacctccaaatgggtcaacattggaaatacacatagctt |
103 |
Q |
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| T |
8188771 |
cttttgaagcaaggctaacagaatattaacactaactaaaccaacctccaaatcggtcaacattggaaatacacatagctt |
8188851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 8188864 - 8188904
Alignment:
| Q |
128 |
cagaacctggaatggatgacgcaacgaaactgatttatatt |
168 |
Q |
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| T |
8188864 |
cagaacctggaatgaatggcacaacgaaactgatttatatt |
8188904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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