View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21298_low_4 (Length: 569)
Name: NF21298_low_4
Description: NF21298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21298_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 537; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 6 - 554
Target Start/End: Complemental strand, 33634292 - 33633744
Alignment:
| Q |
6 |
tattgcttctagtgctcaagccattcattgtgaagtggataatctaacttcaagtgagtgtttcaattttgtagctgtgtatgtttttaataccttggaa |
105 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33634292 |
tattgcttctagtgctcaagccattcattgtgaagtggataatctaacttcaagtgagtgtttcaattttgtagctgtgtatgcttttaataccttggaa |
33634193 |
T |
|
| Q |
106 |
caaaggaaggagctttggaattttattgctcatactagtgctcaaaactctagaaatttgttaataggtggtgactttaataatgtgttgttggttgatg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33634192 |
caaaggaaggagctttggaattttattgctcatactagtgctcaaaactctagaaatttgttaataggtggtgactttaataatgtgttgttggttgatg |
33634093 |
T |
|
| Q |
206 |
ataggcgtaatggtaatccagtgactcaacatgagattcaagatttttccgattgtctgctgcataatagactataggaagtgagaacaatcggagatta |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33634092 |
ataggcgtaatggtaatccagtgactcaacatgagattcaagatttttccgattgtctgctgcataatagactatcggaagtgagaacaatcggagatta |
33633993 |
T |
|
| Q |
306 |
ttatacttggtgtaataaccaaactagtggagatagaatatattctaagatagacagatttattgctaatactagttggctgcaaaagttcaccaatgca |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33633992 |
ttatacttggtgtaataaccaaactagtggagatagaatatattctaagatagacagatttattgctaatactagttggctgcaaaagttcaccaatgca |
33633893 |
T |
|
| Q |
406 |
gtgggcgaagtgcttcctaaaggagtatctgatcactgtccaatatctatggatatgtcttgtcctgcttctcctaagaatactccttttagatttatta |
505 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33633892 |
gtgggcgaagtgcttcctaaaggagtatctgatcactgtcctatatctatggatatgtcttgtcctgcttctcctaagaatactccttttagatttatta |
33633793 |
T |
|
| Q |
506 |
atgttttgactgaccatcatctttttcctgccttgatacaagagaaatg |
554 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33633792 |
atgttttgactgaccatcatctttttcctgccttgatacaagagaaatg |
33633744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 6 - 380
Target Start/End: Complemental strand, 18265028 - 18264654
Alignment:
| Q |
6 |
tattgcttctagtgctcaagccattcattgtgaagtggataatctaacttcaagtgagtgtttcaattttgtagctgtgtatgtttttaataccttggaa |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
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|
| T |
18265028 |
tattgcttctagtgctcaagccattcattgtgaagtggataatctaacttcaagtgagtgtttcagttttgtagctgtgtatgcttttaataccttggaa |
18264929 |
T |
|
| Q |
106 |
caaaggaaggagctttggaattttattgctcatactagtgctcaaaactctagaaatttgttaataggtggtgactttaataatgtgttgttggttgatg |
205 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18264928 |
caaaggaaggagatttggaattttattgctcatactagtgctcaaaactctagaaatttgttaataggtggtgactttaataatgtgttgttggttgatg |
18264829 |
T |
|
| Q |
206 |
ataggcgtaatggtaatccagtgactcaacatgagattcaagatttttccgattgtctgctgcataatagactataggaagtgagaacaatcggagatta |
305 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
18264828 |
ataggcgtaatggtaatccattgactcaacatgagattcaagatttttccgattgtctgctgcataatagactatcggaagtgagaacaatcggagatta |
18264729 |
T |
|
| Q |
306 |
ttatacttggtgtaataaccaaactagtggagatagaatatattctaagatagacagatttattgctaatactag |
380 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
18264728 |
ttatacttggtgtaataaccaaactaatggagatagaatatattccaagatagacagatttattgctaatactag |
18264654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 509; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 6 - 554
Target Start/End: Complemental strand, 3941060 - 3940512
Alignment:
| Q |
6 |
tattgcttctagtgctcaagccattcattgtgaagtggataatctaacttcaagtgagtgtttcaattttgtagctgtgtatgtttttaataccttggaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
3941060 |
tattgcttctagtgctcaagccattcattgtgaagtggttaatctaacttcaagtgagtgtttcaattttgtagctgtgtatgcttttaataccttggaa |
3940961 |
T |
|
| Q |
106 |
caaaggaaggagctttggaattttattgctcatactagtgctcaaaactctagaaatttgttaataggtggtgactttaataatgtgttgttggttgatg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3940960 |
caaaggaaggagctttggaattttattgctcatactagtgctcaaaactctagaaatttgttaataggtggtgactttaataatgtgttgttggttgatg |
3940861 |
T |
|
| Q |
206 |
ataggcgtaatggtaatccagtgactcaacatgagattcaagatttttccgattgtctgctgcataatagactataggaagtgagaacaatcggagatta |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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|
| T |
3940860 |
ataggcgtaatggtaatccagtgactcaacatgagattcaagatttttccgattgtctgctgcataataggctatcagaagtgagaacaatcggagatta |
3940761 |
T |
|
| Q |
306 |
ttatacttggtgtaataaccaaactagtggagatagaatatattctaagatagacagatttattgctaatactagttggctgcaaaagttcaccaatgca |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3940760 |
ttatacttggtgtaataaccaaactagtggagatagaatatattctaagatagatagatttattgctaatactagttggctgcaaaagttcaccaatgca |
3940661 |
T |
|
| Q |
406 |
gtgggcgaagtgcttcctaaaggagtatctgatcactgtccaatatctatggatatgtcttgtcctgcttctcctaagaatactccttttagatttatta |
505 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3940660 |
gtggacgaagtgcttcctaaaggagcatctgatcactgtcctatatctatggatatgtcttgtcctgcttctcctaagaatactccttttagatttatta |
3940561 |
T |
|
| Q |
506 |
atgttttgactgaccatcatctttttcctgccttgatacaagagaaatg |
554 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3940560 |
atgatttgactgaccatcatctttttcctgccttgatacaagagaaatg |
3940512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 298 - 373
Target Start/End: Original strand, 5666373 - 5666448
Alignment:
| Q |
298 |
ggagattattatacttggtgtaataaccaaactagtggagatagaatatattctaagatagacagatttattgcta |
373 |
Q |
| |
|
||||| ||||| || ||||| ||||||||| | ||||| |||||||| |||||||||||||| || |||||||||| |
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|
| T |
5666373 |
ggagagtattacacatggtgcaataaccaagcaagtggtgatagaatctattctaagatagataggtttattgcta |
5666448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 179 - 553
Target Start/End: Complemental strand, 35169155 - 35168780
Alignment:
| Q |
179 |
actttaataatgtgttgttggttgatgataggcgtaatggtaatccagtgactcaacatgagattcaagatttttccgattgtctgctgcataatagact |
278 |
Q |
| |
|
||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||| |||||||| ||||||| || |
|
|
| T |
35169155 |
actttaataatgtgttgacggttgatgataggcttaatggtaatccagtgactgaacatgatattcaagatttttccgaatgtctgctccataataagct |
35169056 |
T |
|
| Q |
279 |
ataggaagtgagaacaatcggagattattatacttggtgtaataaccaaactagtggagatagaatatattctaagatagacagatttattgctaatact |
378 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||| ||| |
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|
| T |
35169055 |
atcggaagtgagaacaatcggagatcattatacatggtgtaataaccaagctagtggagatagaatctattataagatagacagatttattgctaacact |
35168956 |
T |
|
| Q |
379 |
agttggctgcaaaagttcaccaatgcagtgggcgaagtgcttcctaaaggagtatctgatcactgtccaatatctatggatatgtcttgtcctgcttctc |
478 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||| ||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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|
| T |
35168955 |
agttggctgcaaaggttcaacaatgcactgggtgaagttcttcctaaaggagtatctgatcactgtcctatatgtatggatatgtcttgtcctgcttctc |
35168856 |
T |
|
| Q |
479 |
ctaagaatactccttttagatttattaatgttttgactgaccatcatct-ttttcctgccttgatacaagagaaat |
553 |
Q |
| |
|
| |||||||||||||| |||||||||||| ||||||||||||||||| ||||||| | |||||||| ||||||| |
|
|
| T |
35168855 |
caaagaatactcctttcctatttattaatgtattgactgaccatcatcttttttccttcgttgatacaggagaaat |
35168780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 35169252 - 35169154
Alignment:
| Q |
8 |
ttgcttctagtgctcaagccattcattgtgaagtggataatctaacttcaagtgagtgtttcaattttgtagctgtgtatgtttttaataccttggaac |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | |||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
35169252 |
ttgcttctagtgctcaagccattcattgtgaagttgttaatctaacttcaaataagtgtttcaattttgtagctgtgtatgcttttaataccttggaac |
35169154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 167 - 554
Target Start/End: Original strand, 40950822 - 40951209
Alignment:
| Q |
167 |
taataggtggtgactttaataatgtgttgttggttgatgataggcgtaatggtaatccagtgactcaacatgagattcaagatttttccgattgtctgct |
266 |
Q |
| |
|
|||| |||||||| || |||| ||| |||||||||||||||||| |||||||||| || |||||||| || |||||||||||| | |||||| |||| |
|
|
| T |
40950822 |
taattggtggtgatttcaatagtgtattgttggttgatgataggttgaatggtaatctggttactcaacaggaaattcaagattttgcagattgtatgct |
40950921 |
T |
|
| Q |
267 |
gcataatagactataggaagtgagaacaatcggagattattatacttggtgtaataaccaaactagtggagatagaatatattctaagatagacagattt |
366 |
Q |
| |
|
||||| || | || || ||||| || || |||||||| |||||||| ||||||||| | || || |||| |||||||||||||| || ||| |
|
|
| T |
40950922 |
cactaataatctttcagaggtaagaactataggtgattattacacttggtgcaataaccaagcaagcaatgacggaatctattctaagatagataggttt |
40951021 |
T |
|
| Q |
367 |
attgctaatactagttggctgcaaaagttcaccaatgcagtgggcgaagtgcttcctaaaggagtatctgatcactgtccaatatctatggatatgtctt |
466 |
Q |
| |
|
||||||| |||| |||| | || | |||| |||| |||||| ||||| |||||||||||||||||||||||||| ||| ||||| | ||| |
|
|
| T |
40951022 |
cttgctaacactaattggttacatagtttcagtaatgtagtgggtgaagtatatcctaaaggagtatctgatcactgtcatataagcttggatcttgctt |
40951121 |
T |
|
| Q |
467 |
gtcctgcttctcctaagaatactccttttagatttattaatgttttgactgaccatcatctttttcctgccttgatacaagagaaatg |
554 |
Q |
| |
|
|||| |||| ||| ||||| || || |||||| |||||||||||||||| ||||| | ||||| |||||||||||| ||||| |
|
|
| T |
40951122 |
atccttcttccactagaaataccccattcagatttcttaatgttttgactgaacatcacatgtttccaagcttgatacaagaaaaatg |
40951209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 298 - 389
Target Start/End: Complemental strand, 27186912 - 27186821
Alignment:
| Q |
298 |
ggagattattatacttggtgtaataaccaaactagtggagatagaatatattctaagatagacagatttattgctaatactagttggctgca |
389 |
Q |
| |
|
||||||||||| | ||||||||||||||| | ||||| |||| |||||||||||||||||| || ||||||||||| |||| |||| |||| |
|
|
| T |
27186912 |
ggagattattacaaatggtgtaataaccaagcaagtggtgatataatatattctaagatagataggtttattgctaacactacttgggtgca |
27186821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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