View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21298_low_5 (Length: 535)

Name: NF21298_low_5
Description: NF21298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21298_low_5
NF21298_low_5
[»] chr1 (3 HSPs)
chr1 (20-524)||(34593036-34593538)
chr1 (201-250)||(2583065-2583114)
chr1 (358-414)||(34577609-34577665)
[»] chr5 (2 HSPs)
chr5 (200-307)||(25538790-25538894)
chr5 (215-250)||(24122981-24123016)
[»] chr6 (4 HSPs)
chr6 (358-417)||(32589846-32589905)
chr6 (358-417)||(32600294-32600353)
chr6 (200-281)||(20589647-20589726)
chr6 (353-415)||(24884037-24884099)
[»] scaffold0437 (1 HSPs)
scaffold0437 (200-250)||(14315-14365)
[»] chr3 (2 HSPs)
chr3 (200-250)||(16038000-16038050)
chr3 (200-250)||(16053496-16053546)
[»] chr2 (1 HSPs)
chr2 (200-250)||(20477468-20477518)


Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 20 - 524
Target Start/End: Original strand, 34593036 - 34593538
Alignment:
Q  20 agtgtcatacttttctatttatgaaagaatgacattagcattgaatacaataatggcattaataatacgtacacactagtataatttaagaaaacaagaa 119  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34593036 agtgtcatacttttctatttatgaaagaatgacataagcattgaatacaataatggcattaataatacgtacacactagtataatttaagaaaacaagaa 34593135  T
Q  120 tgattaaataaaatcaaatgtgttggtgtcgggcatcaacccgtgagatagtatggtagggatggtgtatggnnnnnnnnataagccaggagataggaca 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||         ||||||||||||||||||||    
T  34593136 tgattaaataaaatcaaatgtgttggtgtcgggcatcaacccgtgagatagtatggtagggatagtgtatg-ttttttttataagccaggagataggaca 34593234  T
Q  220 gacatcaagaggaatcaccgacatctcaactggttgctggcacctcggagaacttccatcctctaacgcctacctcaaaaattctattnnnnnnnnngga 319  Q
    || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||         |||    
T  34593235 gatatcaagaggaaacaccgacatctcaactggttgctggcacctcggagaacttccatcctctaccgcctacctcaaaaattttattaaaaaaaaagga 34593334  T
Q  320 tagtgtatgaaatcatgggatcaaaaaacaagaaaattacctccaaatcattagtacttttcactttctttccttgaactcctagtttatctgcaataac 419  Q
    ||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  34593335 tagtgtatgaaatcaagggatcaaaa-acaagaaagttacctccaaatcattagtacttttcactttctttccttgaactcctagtttgtctgcaataac 34593433  T
Q  420 agaaggaaaattagattttttgagtgttatatcgtatggacatatagaagaaagcaatgcttttgtctttctagtaattcatgaattctgttttatctat 519  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34593434 agaaggaaaatttgattttttgagtgttatatcgtattgacatatagaagaaagcaatgcttttgtctttctagtaattcatgaattctgttttatctat 34593533  T
Q  520 acctt 524  Q
    |||||    
T  34593534 acctt 34593538  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 250
Target Start/End: Original strand, 2583065 - 2583114
Alignment:
Q  201 taagccaggagataggacagacatcaagaggaatcaccgacatctcaact 250  Q
    ||||| |||||| |||||||||||||||||| |||| ||||||| |||||    
T  2583065 taagcaaggagagaggacagacatcaagaggcatcatcgacatcccaact 2583114  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 414
Target Start/End: Original strand, 34577609 - 34577665
Alignment:
Q  358 acctccaaatcattagtacttttcactttctttccttgaactcctagtttatctgca 414  Q
    ||||| ||||||||  | ||||| ||||||||||| |||||||| ||||||||||||    
T  34577609 acctctaaatcattgttgctttttactttctttccctgaactccaagtttatctgca 34577665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 200 - 307
Target Start/End: Complemental strand, 25538894 - 25538790
Alignment:
Q  200 ataagccaggagataggacagacatcaagaggaatcaccgacatctcaactggttgctggcacctcggagaacttccatcctctaacgcctacctcaaaa 299  Q
    ||||| ||||||||||||||  |||||||||||| |||||||||  ||||||   | | ||| |||||||||  || |||||||| |||||| |||||||    
T  25538894 ataagtcaggagataggacatgcatcaagaggaaacaccgacattccaactg---gatcgcatctcggagaatctctatcctctaccgcctaactcaaaa 25538798  T
Q  300 attctatt 307  Q
    ||| ||||    
T  25538797 attttatt 25538790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 250
Target Start/End: Complemental strand, 24123016 - 24122981
Alignment:
Q  215 ggacagacatcaagaggaatcaccgacatctcaact 250  Q
    ||||||||||||||||||| ||||||||||||||||    
T  24123016 ggacagacatcaagaggaaacaccgacatctcaact 24122981  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 417
Target Start/End: Original strand, 32589846 - 32589905
Alignment:
Q  358 acctccaaatcattagtacttttcactttctttccttgaactcctagtttatctgcaata 417  Q
    ||||| ||||||||  | ||||| ||||||||||| |||||||| |||||||||||||||    
T  32589846 acctctaaatcattgttgctttttactttctttccctgaactccaagtttatctgcaata 32589905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 417
Target Start/End: Original strand, 32600294 - 32600353
Alignment:
Q  358 acctccaaatcattagtacttttcactttctttccttgaactcctagtttatctgcaata 417  Q
    ||||| ||||||||  | ||||| ||||||||||| |||||||| |||||||||||||||    
T  32600294 acctctaaatcattgttgctttttactttctttccctgaactccaagtttatctgcaata 32600353  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 281
Target Start/End: Complemental strand, 20589726 - 20589647
Alignment:
Q  200 ataagccaggagataggacagacatcaagaggaatcaccgacatctcaactggttgctggcacctcggagaacttccatcct 281  Q
    |||| |||||||| ||||||| |||||||||| | | |||||||||||||| |  | ||||||| |||||||| ||||||||    
T  20589726 ataaaccaggagaaaggacaggcatcaagagggacctccgacatctcaactag--gttggcaccccggagaacctccatcct 20589647  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 353 - 415
Target Start/End: Complemental strand, 24884099 - 24884037
Alignment:
Q  353 aaattacctccaaatcattagtacttttcactttctttccttgaactcctagtttatctgcaa 415  Q
    |||| ||||||||||||| | |||||||||| ||||| ||||||| ||||| ||| |||||||    
T  24884099 aaatcacctccaaatcatcattacttttcaccttcttcccttgaattcctaatttgtctgcaa 24884037  T

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Target: scaffold0437 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 250
Target Start/End: Original strand, 14315 - 14365
Alignment:
Q  200 ataagccaggagataggacagacatcaagaggaatcaccgacatctcaact 250  Q
    |||||| |||||| |||||||||||||||||| |||| ||||||| |||||    
T  14315 ataagcaaggagagaggacagacatcaagaggcatcatcgacatcccaact 14365  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 250
Target Start/End: Complemental strand, 16038050 - 16038000
Alignment:
Q  200 ataagccaggagataggacagacatcaagaggaatcaccgacatctcaact 250  Q
    |||||| |||||| | |||||||||||||||| |||| |||||||||||||    
T  16038050 ataagcaaggagagatgacagacatcaagaggcatcatcgacatctcaact 16038000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 250
Target Start/End: Complemental strand, 16053546 - 16053496
Alignment:
Q  200 ataagccaggagataggacagacatcaagaggaatcaccgacatctcaact 250  Q
    |||||| |||||| | |||||||||||||||| |||| |||||||||||||    
T  16053546 ataagcaaggagagatgacagacatcaagaggcatcatcgacatctcaact 16053496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 200 - 250
Target Start/End: Complemental strand, 20477518 - 20477468
Alignment:
Q  200 ataagccaggagataggacagacatcaagaggaatcaccgacatctcaact 250  Q
    |||||| |||||| |||||||||||||||||| |||| ||||||| |||||    
T  20477518 ataagcaaggagaaaggacagacatcaagaggcatcatcgacatcccaact 20477468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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