View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21298_low_6 (Length: 444)
Name: NF21298_low_6
Description: NF21298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21298_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 19 - 444
Target Start/End: Complemental strand, 45541433 - 45541011
Alignment:
| Q |
19 |
catgtgactgatgtcgagaattagattttttatcttcctttttaacaacatactttgtagtttgactactctccattatgacctctctcattgtctcagc |
118 |
Q |
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| T |
45541433 |
catgtgactgatgtcgagaattagattttttatcttcctttttaacaacatactttgtagtttgactactctccattatgacctctctcattgtctcagc |
45541334 |
T |
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| Q |
119 |
agcttttgcttcagttaccttcaaaccttcttcgtgaagttcggcagttcccttgcttatagcgttgaatttattcacaggtactggaggttgatgattt |
218 |
Q |
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| T |
45541333 |
agcttttgcttcagttaccttcaaaccttcttcgtgaagttcggcagttcccttgctaatagcgttgaatttattcacaggtactggaggttgatgattt |
45541234 |
T |
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| Q |
219 |
ggcgaagcaatatgctgatcggacatatatacatcaccagacttatctaaatcagaagaagatttgaagcaagctagttcacttgagaaacttgtatttc |
318 |
Q |
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| T |
45541233 |
ggcgaagcaatatactgatcggacatacatacatcaccagacttatctaaatcag---aagatttgaagcaagctagttcacttgagaaacttgtatttc |
45541137 |
T |
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| Q |
319 |
ccatataaatgctgaagagtgattcgttagaggcagtgctccattctactggggcatttgtattgtttctagcaaatacatgagatggaaagacatattg |
418 |
Q |
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| T |
45541136 |
ccatataaatgctgaagagtgattcgttagaggcagtgctccattctactggggcatttgtattgtttctagcaaatacatgagatggaaagacatattg |
45541037 |
T |
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| Q |
419 |
ggcattagtcacattttcacttggac |
444 |
Q |
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| T |
45541036 |
ggcattagtcacattttcacttggac |
45541011 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 7927504 - 7927458
Alignment:
| Q |
90 |
tccattatgacctctctcattgtctcagcagcttttgcttcagttac |
136 |
Q |
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| T |
7927504 |
tccattataacctgtctcattgtctcagcagctttttcctcagttac |
7927458 |
T |
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