View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21298_low_9 (Length: 308)
Name: NF21298_low_9
Description: NF21298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21298_low_9 |
 | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 32)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 9 - 290
Target Start/End: Original strand, 4592152 - 4592433
Alignment:
| Q |
9 |
acatcatcacttaaattcaataggggaagatcaatcaattattgttgaactgctttgcataaaaaattacttaaatttgattttatttaagcaacacctc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4592152 |
acatcatcacttaaattcaataggggaagatcaatcaattattgttgaactgctttgcataaaaaattacttaaatttgattttatttaagcaacacctc |
4592251 |
T |
|
| Q |
109 |
cttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgcctttttcctcatcttcttt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4592252 |
cttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgttctcctctgccttcttcttcaactcgattgcctttttcctcatcttcttt |
4592351 |
T |
|
| Q |
209 |
cctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacattcgtaccaatttccatcccaatct |
290 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
4592352 |
cctttctctcccaccatcaattcattgataagtttctccacctcctctctctttacattcgtatcaatttccatcccaatct |
4592433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 17 - 290
Target Start/End: Original strand, 4563640 - 4563913
Alignment:
| Q |
17 |
acttaaattcaataggggaagatcaatcaattattgttgaactgctttgcataaaaaa-ttacttaaatttgattttatttaagcaacacctccttgatc |
115 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||| ||||||||||| |||||| ||||||||| |||||||||||| |
|
|
| T |
4563640 |
acttaaattcaataggggaagatcaattaattatcgttgaactgaattgcataaaaaagttacttaaatt-gattttgtttaagcaaaacctccttgatc |
4563738 |
T |
|
| Q |
116 |
aatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgcctttttcctcatcttctttcctttct |
215 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||| ||||||| | |||||| | |||||||||||||| |||||||||| || ||||||||||||||||| |
|
|
| T |
4563739 |
actttgtccaagttcatgtatgaacaacctccagctctcgtgttttcctccactttcttcttcaactcaattgccttttgccgcatcttctttcctttct |
4563838 |
T |
|
| Q |
216 |
ctcccaccatcaattcattgacaagtttctccacctcctccctctttacattcgtaccaatttccatcccaatct |
290 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| || ||||||||||||||| | |||||||||||||||| |
|
|
| T |
4563839 |
ctcctgacatcaattcattgacaagtttctccacctcttctctctttacattcgtatcgatttccatcccaatct |
4563913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 63 - 290
Target Start/End: Original strand, 4585608 - 4585838
Alignment:
| Q |
63 |
ttgcataaaaaatt-acttaaa--tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgct |
159 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||||||||||||| |||||||| |||| ||| |||||||| || |||||||||||||||||||||||| |
|
|
| T |
4585608 |
ttgcataaaaaattcacttataggtttgattttatttaagcaaaacctccttaatcactttttccaagtttatgtatgaacaacctccaggtctcgtgtc |
4585707 |
T |
|
| Q |
160 |
ctcctccgccttcttcttcaactcgattgcctttttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctc |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||| ||| |
|
|
| T |
4585708 |
ctcctccgccttcttcttcaactcgattgccttttgcctcatcttctttccattctctcccaccatcaattcattgaccaacttctccacctcctctctc |
4585807 |
T |
|
| Q |
260 |
tttacattcgtaccaatttccatcccaatct |
290 |
Q |
| |
|
|| ||||| || ||| |||||||||||||| |
|
|
| T |
4585808 |
ttcacattggtgtcaacttccatcccaatct |
4585838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 79 - 288
Target Start/End: Complemental strand, 4613859 - 4613650
Alignment:
| Q |
79 |
ttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttc |
178 |
Q |
| |
|
|||| ||||||||| ||| |||| |||||| ||||||| |||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||| |
|
|
| T |
4613859 |
ttaagtttgattttgtttcagcagcacctcattgatcactttgtccaagttcatatatgaacaacctcctggtctcgtgtcctcctctgccttcttcttc |
4613760 |
T |
|
| Q |
179 |
aactcgattgcctttttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacattcgtaccaattt |
278 |
Q |
| |
|
||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||| || ||||| ||||| || ||||| ||||| || |||||| |
|
|
| T |
4613759 |
aactcaattgccttttgcctcattttctttcctttctctcccaccatcaattcattgaccagcttctctacctcatctctcttcacattggtgtcaattt |
4613660 |
T |
|
| Q |
279 |
ccatcccaat |
288 |
Q |
| |
|
|||||||||| |
|
|
| T |
4613659 |
ccatcccaat |
4613650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 84 - 279
Target Start/End: Original strand, 4560502 - 4560697
Alignment:
| Q |
84 |
tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactc |
183 |
Q |
| |
|
||||||||| |||||||||||||||||| |||| ||| ||||||||||| |||||||||||||||||||||||| | |||||||||| ||||||| ||| |
|
|
| T |
4560502 |
tttgattttgtttaagcaacacctccttaatcactttctccaagttcatgtatgaacaacctccaggtctcgtgtacacctccgcctttttcttcagctc |
4560601 |
T |
|
| Q |
184 |
gattgcctttttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacattcgtaccaatttc |
279 |
Q |
| |
|
|| ||||||| |||||||||||||||||| |||| ||||||||||||||| ||||||||||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
4560602 |
catggccttttgcctcatcttctttcctttatctcaggacatcaattcattgaccagtttctccacgtcctccctctttacatttgtatcaatttc |
4560697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 77 - 267
Target Start/End: Original strand, 4579421 - 4579611
Alignment:
| Q |
77 |
acttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct |
176 |
Q |
| |
|
|||||| || |||||| ||| || ||||||||||| |||| ||| ||||||||||| |||||||| ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
4579421 |
acttaagttcgattttgtttgagtaacacctccttaatcactttctccaagttcatgtatgaacagcctccaggtctcgtgtcctcctccaccttcttct |
4579520 |
T |
|
| Q |
177 |
tcaactcgattgcctttttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacatt |
267 |
Q |
| |
|
||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||| || || |||||||||||||| ||||| ||||| |
|
|
| T |
4579521 |
tcaactcaattgccttttgcctcatcttctttgctttctctcccaccatcaattcattaaccagcttctccacctcctctctcttcacatt |
4579611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 85 - 290
Target Start/End: Original strand, 4574305 - 4574510
Alignment:
| Q |
85 |
ttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcg |
184 |
Q |
| |
|
|||||||| |||||||||||||||||| |||| ||| |||||||| | |||||||||||||||||||||||| | ||||| |||||||||||| ||| |
|
|
| T |
4574305 |
ttgattttgtttaagcaacacctccttaatcactttctccaagtttgtgtatgaacaacctccaggtctcgtgtccacctccaccttcttcttcagctca |
4574404 |
T |
|
| Q |
185 |
attgcctttttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacattcgtaccaatttccatcc |
284 |
Q |
| |
|
|| || |||| |||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||| | |||||| | | |
|
|
| T |
4574405 |
atggctttttgcctcatcttctttcctttatctccggacatcaattcattgaccagtttctccacctcctccctctttacattagtatcgatttcctttc |
4574504 |
T |
|
| Q |
285 |
caatct |
290 |
Q |
| |
|
|||||| |
|
|
| T |
4574505 |
caatct |
4574510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 86 - 290
Target Start/End: Original strand, 4570970 - 4571174
Alignment:
| Q |
86 |
tgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcga |
185 |
Q |
| |
|
||||||||||||||||| |||||||| |||| ||| ||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||| ||| | |
|
|
| T |
4570970 |
tgattttatttaagcaaaacctccttaatcactttttccaagttcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcttcttcatctcca |
4571069 |
T |
|
| Q |
186 |
ttgcctttttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacattcgtaccaatttccatccc |
285 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||| | ||||| ||||| ||| | ||||| || || |
|
|
| T |
4571070 |
ttatatttttcctcatcttctttcctttatctcccaccatcaattcattgaccaaattctccacctcatttctcttcacattagtatcgatttcgattcc |
4571169 |
T |
|
| Q |
286 |
aatct |
290 |
Q |
| |
|
||||| |
|
|
| T |
4571170 |
aatct |
4571174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 94 - 291
Target Start/End: Original strand, 3171747 - 3171944
Alignment:
| Q |
94 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt |
193 |
Q |
| |
|
||||||||| |||||||| |||| ||| ||||||||||| ||||||||||| ||| ||| || |||||| ||||||||||||||||| || ||| || |
|
|
| T |
3171747 |
tttaagcaagacctccttaatcactttatccaagttcatgtatgaacaaccaccaaatcttgtatcctcctctgccttcttcttcaactccatggccctt |
3171846 |
T |
|
| Q |
194 |
ttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacattcgtaccaatttccatcccaatctt |
291 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| | ||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
3171847 |
tgcctcatcttctttcctttctctcccaccatcaattcgttgatcagtttctctacctcccctctctttacattggtatcaatttccatcccaatctt |
3171944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 94 - 290
Target Start/End: Complemental strand, 4504523 - 4504327
Alignment:
| Q |
94 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt |
193 |
Q |
| |
|
||||||||| || ||||| |||| ||||||||||||||| ||||||||||| ||| |||| ||| |||||| ||||||||||||||||| || |||||| |
|
|
| T |
4504523 |
tttaagcaagacgtccttaatcactttgtccaagttcatgtatgaacaaccaccaagtcttgtgtcctcctctgccttcttcttcaactccatggccttt |
4504424 |
T |
|
| Q |
194 |
ttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacattcgtaccaatttccatcccaatct |
290 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||| || |||| |||||| | | |||| | ||||||||||| |
|
|
| T |
4504423 |
tgcctcatcttctttcctttctctcccaccatcaattcattaataagtttctctacctcttctctctgtacattggcatcaatcttcatcccaatct |
4504327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 94 - 290
Target Start/End: Complemental strand, 4490481 - 4490285
Alignment:
| Q |
94 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt |
193 |
Q |
| |
|
|||||||| || ||||| |||| ||||||||||||||| ||||||| ||| || |||||||| |||| | ||||||||||||||||| | |||||| |
|
|
| T |
4490481 |
tttaagcatgacatccttaatcactttgtccaagttcatgtatgaactaccaccgagtctcgtgtcctccgctgccttcttcttcaactccgtcgccttt |
4490382 |
T |
|
| Q |
194 |
ttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacattcgtaccaatttccatcccaatct |
290 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||||| ||| |||||| ||||||||||| |
|
|
| T |
4490381 |
tgcctcatcttctttcctttctctcccaccatcaattcattgatcagtttctctacctcttctctctttacattggtatcaattttcatcccaatct |
4490285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 88 - 290
Target Start/End: Complemental strand, 4515253 - 4515051
Alignment:
| Q |
88 |
attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt |
187 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||| |||||| | || ||| |||| ||| ||| || |||||||| |||||||| || |
|
|
| T |
4515253 |
attttgtttaagcaacacctccttgatcactttgtccaagttcaagtatgaagacccgccaagtctagtgtcctcgtctgccttctttttcaactccata |
4515154 |
T |
|
| Q |
188 |
gcctttttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacattcgtaccaatttccatcccaa |
287 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||||||||||||||| || || |||||||| ||||| |||||| || | ||||| ||||||| |
|
|
| T |
4515153 |
acctttttcctcattttatttcctttctctcccaccatcaattcattgacaagcttttcaacctcctctctcttcacattcatatcgatttcgatcccaa |
4515054 |
T |
|
| Q |
288 |
tct |
290 |
Q |
| |
|
||| |
|
|
| T |
4515053 |
tct |
4515051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 69 - 279
Target Start/End: Original strand, 4516302 - 4516512
Alignment:
| Q |
69 |
aaaaaattacttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgc |
168 |
Q |
| |
|
||||||| |||| ||| | ||||| ||| |||| ||||||||| |||| ||| |||||||||| |||||||||||| || ||||| ||| |||||| || |
|
|
| T |
4516302 |
aaaaaatcactttaatctaattttgtttgagcagcacctccttaatcactttttccaagttcacatatgaacaaccacctggtcttgtgtcctcctctgc |
4516401 |
T |
|
| Q |
169 |
cttcttcttcaactcgattgcctttttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacattc |
268 |
Q |
| |
|
|||||||||||| || || ||||||| |||||||||||||||||| ||||||||||| |||||||||| || |||||||||||||| ||||| ||||| |
|
|
| T |
4516402 |
cttcttcttcaattccatggccttttgcctcatcttctttcctttatctcccaccattaattcattgatcagcttctccacctcctctctcttcacattg |
4516501 |
T |
|
| Q |
269 |
gtaccaatttc |
279 |
Q |
| |
|
||| ||||||| |
|
|
| T |
4516502 |
gtatcaatttc |
4516512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 84 - 290
Target Start/End: Original strand, 4557121 - 4557327
Alignment:
| Q |
84 |
tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactc |
183 |
Q |
| |
|
||||||||| ||||||||| |||||||| |||| ||| ||||| ||||| ||||||||||| |||||||||||| ||||||||||||| |||||| ||| |
|
|
| T |
4557121 |
tttgattttgtttaagcaaaacctccttaatcactttttccaaattcatgtatgaacaaccaccaggtctcgtgtcctcctccgccttcgtcttcatctc |
4557220 |
T |
|
| Q |
184 |
gattgcctttttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacattcgtaccaatttccatc |
283 |
Q |
| |
|
||| |||||||| |||||||||||||||||| ||| |||||||||||||||| | ||||| ||||| || ||||| ||||| || |||||||||| |
|
|
| T |
4557221 |
aattatctttttccacatcttctttcctttctccccctccatcaattcattgaccaaattctctacctcatctctcttcacattggtgtcaatttccatg |
4557320 |
T |
|
| Q |
284 |
ccaatct |
290 |
Q |
| |
|
||||||| |
|
|
| T |
4557321 |
ccaatct |
4557327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 4480693 - 4480841
Alignment:
| Q |
88 |
attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt |
187 |
Q |
| |
|
||||| ||||||||| |||||||| |||| ||||||||||||||| ||||||||||| |||||||| ||| |||||| ||| ||||||||||||| || |
|
|
| T |
4480693 |
attttgtttaagcaagacctccttaatcactttgtccaagttcatgtatgaacaaccaccaggtcttgtgtcctcctctgccatcttcttcaactccatg |
4480792 |
T |
|
| Q |
188 |
gcctttttcctcatcttctttcctttctctcccaccatcaattcattga |
236 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
4480793 |
gccttttgcttcatcttctttcctttctctcccaccaacaattcattga |
4480841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 79 - 267
Target Start/End: Original strand, 4598162 - 4598350
Alignment:
| Q |
79 |
ttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttc |
178 |
Q |
| |
|
|||| ||||||| | |||||| ||||||||||| |||| ||| || |||||||| ||||||||||||||| ||||||| ||||||||||||| ||||| |
|
|
| T |
4598162 |
ttaagtttgattctgtttaagaaacacctccttaatcactttctctaagttcatgtatgaacaacctccaagtctcgtttcctcctccgccttcatcttc |
4598261 |
T |
|
| Q |
179 |
aactcgattgcctttttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacatt |
267 |
Q |
| |
|
|| || |||| ||||| |||||| ||||||||||| |||||| ||||||||| ||||| || |||||||||||||| ||||| ||||| |
|
|
| T |
4598262 |
aaatcaattgtcttttgcctcattttctttcctttatctcccgacatcaattcgttgaccagcttctccacctcctctctcttcacatt |
4598350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 88 - 290
Target Start/End: Original strand, 4617022 - 4617224
Alignment:
| Q |
88 |
attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt |
187 |
Q |
| |
|
||||| |||||||||||| ||||| || | ||||| ||||||||| ||||||||||| || ||||| ||| ||||||| ||||||||||||||||| || |
|
|
| T |
4617022 |
attttgtttaagcaacacatccttaataactttgttcaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaactccatg |
4617121 |
T |
|
| Q |
188 |
gcctttttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacattcgtaccaatttccatcccaa |
287 |
Q |
| |
|
||||||| | |||| ||||||||||| ||||| | |||| |||||||| || || ||| |||||| ||||| ||||||||| | |||||||| |||| |
|
|
| T |
4617122 |
gccttttgcttcattttctttcctttatctccggctatcacttcattgatcagctttgccaactcctctctcttcacattcgtatcgatttccataccaa |
4617221 |
T |
|
| Q |
288 |
tct |
290 |
Q |
| |
|
||| |
|
|
| T |
4617222 |
tct |
4617224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 88 - 290
Target Start/End: Original strand, 4601789 - 4601991
Alignment:
| Q |
88 |
attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt |
187 |
Q |
| |
|
||||| |||||||||||||||||| || | |||||||| |||| | ||||||||||| || |||| |||||||||| ||| ||||||||||||| || |
|
|
| T |
4601789 |
attttgtttaagcaacacctccttaataactttgtccaggttcttgtatgaacaaccacctagtctagtgctctcctttgccatcttcttcaactccatg |
4601888 |
T |
|
| Q |
188 |
gcctttttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacattcgtaccaatttccatcccaa |
287 |
Q |
| |
|
||||||| |||||||||||| ||||| ||||| | |||| |||||||| || ||| ||| |||||| ||||| ||||| ||| | |||||||| |||| |
|
|
| T |
4601889 |
gccttttgcctcatcttcttgcctttatctccggctatcacttcattgatcagcttcgccaactcctctctcttcacatttgtatcgatttccataccaa |
4601988 |
T |
|
| Q |
288 |
tct |
290 |
Q |
| |
|
||| |
|
|
| T |
4601989 |
tct |
4601991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 94 - 266
Target Start/End: Original strand, 4469809 - 4469981
Alignment:
| Q |
94 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt |
193 |
Q |
| |
|
||||||||| || ||||| || | ||||||||||||| | |||||| |||||||||||| || ||||||| |||||||||| ||||| || |||| |
|
|
| T |
4469809 |
tttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaactccatgatcttt |
4469908 |
T |
|
| Q |
194 |
ttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacat |
266 |
Q |
| |
|
| ||||||||||||||| |||||||| ||||||||||||||||| || ||||||||||| || ||||| |||| |
|
|
| T |
4469909 |
tccctcatcttctttccattctctccaaccatcaattcattgactagcttctccacctcatctctcttcacat |
4469981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 88 - 249
Target Start/End: Original strand, 4492955 - 4493116
Alignment:
| Q |
88 |
attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt |
187 |
Q |
| |
|
||||| ||||||||| || |||||||||| ||||||||||||||| ||||||||||| |||||| ||| |||||| |||||||| |||||||| | |
|
|
| T |
4492955 |
attttgtttaagcaagacatccttgatcactttgtccaagttcatgtatgaacaaccaccaggtactgtgtcctcctctgccttctttttcaactccgtg |
4493054 |
T |
|
| Q |
188 |
gcctttttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccac |
249 |
Q |
| |
|
|| ||| |||||||||| |||||||||||||| ||||| | |||||||| || |||||||| |
|
|
| T |
4493055 |
gcttttctcctcatcttgtttcctttctctccaaccataatctcattgaccagattctccac |
4493116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 94 - 290
Target Start/End: Original strand, 4625957 - 4626153
Alignment:
| Q |
94 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt |
193 |
Q |
| |
|
||||||||| || || || |||| ||| |||| ||||| ||||||||||| || || || || ||||||| ||||||||||||||||| || |||||| |
|
|
| T |
4625957 |
tttaagcaagacatcattaatcagtttatccatattcatgtatgaacaaccaccgggactaatgttctcctctgccttcttcttcaactccatggccttt |
4626056 |
T |
|
| Q |
194 |
ttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacattcgtaccaatttccatcccaatct |
290 |
Q |
| |
|
| ||||||||||||||| || ||||| |||||||| |||||| |||||||| ||| |||||||||| ||||| | | | |||||||| ||||||| |
|
|
| T |
4626057 |
tgcctcatcttctttccgttatctcctgccatcaatgcattgatcagtttctctaccccctccctcttcacattagcatcgatttccattccaatct |
4626153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 88 - 266
Target Start/End: Original strand, 4461123 - 4461301
Alignment:
| Q |
88 |
attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt |
187 |
Q |
| |
|
||||| ||||||||| || ||||| || | ||||||||||||| | |||||| |||||||||||| || ||||||| |||||||||| || || || |
|
|
| T |
4461123 |
attttgtttaagcaagacatccttaatgactttgtccaagttcttgtatgaaacacctccaggtctggtatcctcctccaccttcttcttgaattccatg |
4461222 |
T |
|
| Q |
188 |
gcctttttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacat |
266 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| ||||||||||| ||||| | ||||||||||| |||||||| |||| |
|
|
| T |
4461223 |
accttttgcctcatcttctttccaatctctccaaccatcaattcgttgaccaacttctccacctcatccctcttcacat |
4461301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 88 - 246
Target Start/End: Original strand, 4505857 - 4506015
Alignment:
| Q |
88 |
attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt |
187 |
Q |
| |
|
||||| |||||||||||||||||| || | ||||||||||||||| |||||||||| |||||||| || ||||| ||| |||| |||||||| || |
|
|
| T |
4505857 |
attttgtttaagcaacacctccttaataactttgtccaagttcatgaatgaacaaccaccaggtcttgtatcctcctttgccctctttttcaactccatg |
4505956 |
T |
|
| Q |
188 |
gcctttttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctc |
246 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||| | ||||| ||| || ||||| |
|
|
| T |
4505957 |
acctttttcctcatcttgtttcctttctctccaaccataatttcatcgaccagcttctc |
4506015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 107 - 279
Target Start/End: Original strand, 4568072 - 4568247
Alignment:
| Q |
107 |
tccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgc---cttcttcttcaactcgattgcctttttcctcatct |
203 |
Q |
| |
|
||||| |||| ||||||||||||||| |||||| || | |||||||| ||| || ||| || ||||||||||||||| | ||||||| |||||||| |
|
|
| T |
4568072 |
tccttaatcactttgtccaagttcatgtatgaagaatcaccaggtcttgtgtccttctctgccttcttcttcttcaactccacggccttttgcctcatct |
4568171 |
T |
|
| Q |
204 |
tctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacattcgtaccaatttc |
279 |
Q |
| |
|
| |||||||||| ||||||||| |||||||| | || |||||||||||||| ||||| ||||| ||| ||||||| |
|
|
| T |
4568172 |
tttttcctttctgtcccaccattaattcattcatcagcttctccacctcctctctcttcacatttgtatcaatttc |
4568247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 94 - 237
Target Start/End: Complemental strand, 4267292 - 4267149
Alignment:
| Q |
94 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt |
193 |
Q |
| |
|
|||||||| |||||||| || | ||||||||||||||| |||||| |||| |||||||| ||| |||| || |||||| |||||||||| | | ||| |
|
|
| T |
4267292 |
tttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccaggtcttgtgttctcttctgccttcctcttcaactccaagacattt |
4267193 |
T |
|
| Q |
194 |
ttcctcatcttctttcctttctctcccaccatcaattcattgac |
237 |
Q |
| |
|
| | ||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
4267192 |
tgcttcatcatatttcctttctctcccaccatcaattcattgac |
4267149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 94 - 236
Target Start/End: Original strand, 4622148 - 4622290
Alignment:
| Q |
94 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt |
193 |
Q |
| |
|
|||||||| |||||||| || | |||||||||||| | ||||||||||| ||||| || || |||| || ||||||| ||||||||| || |||||| |
|
|
| T |
4622148 |
tttaagcatgacctccttaataactttgtccaagttgttgtatgaacaaccaccagggctggtcgtctcatctgccttctccttcaactccatggccttt |
4622247 |
T |
|
| Q |
194 |
ttcctcatcttctttcctttctctcccaccatcaattcattga |
236 |
Q |
| |
|
| ||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
4622248 |
tgtctcatcttctttcctttatctcccgacatcaattcattga |
4622290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 94 - 198
Target Start/End: Complemental strand, 4392152 - 4392048
Alignment:
| Q |
94 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt |
193 |
Q |
| |
|
||||||||| |||||||| |||| ||||||||||||||| ||||| |||| ||||||| ||| ||||| |||||||||||||||||||| |||||| |
|
|
| T |
4392152 |
tttaagcaagacctccttaatcagtttgtccaagttcatgaatgaagaaccaccaggtcatgtgtcctcctttgccttcttcttcaactcgatcgccttt |
4392053 |
T |
|
| Q |
194 |
ttcct |
198 |
Q |
| |
|
||||| |
|
|
| T |
4392052 |
ttcct |
4392048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 267
Target Start/End: Complemental strand, 4256738 - 4256565
Alignment:
| Q |
94 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt |
193 |
Q |
| |
|
|||||||| |||||||| || | ||||||||||||||| ||||| ||| | || || ||| ||| ||| | |||||||||||| || || ||||| |
|
|
| T |
4256738 |
tttaagcatgacctccttaataactttgtccaagttcatcaatgaatgaccagctgggctggtgttcttctctgtcttcttcttcaattccatgaccttt |
4256639 |
T |
|
| Q |
194 |
ttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacatt |
267 |
Q |
| |
|
| |||||||||||||||||| |||||| |||||||||||||| || ||||||||||| || ||||| ||||| |
|
|
| T |
4256638 |
tgcctcatcttctttcctttttctcccgacatcaattcattgatcagattctccacctcatctctcttcacatt |
4256565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 290
Target Start/End: Complemental strand, 4299866 - 4299676
Alignment:
| Q |
94 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt |
193 |
Q |
| |
|
|||||||| |||||||| || | ||||||||||||||| || |||||||| || || | ||| ||||||| |||||| ||||| |||||||| |
|
|
| T |
4299866 |
tttaagcagaacctccttaataactttgtccaagttcatgtacgaacaaccacctggattagtgttctcctctgccttc------aactcccttgccttt |
4299773 |
T |
|
| Q |
194 |
ttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacattcgtaccaatttccatcccaatct |
290 |
Q |
| |
|
| |||||||| | ||||||||||||||||||||||||||||| || || ||||||||||| ||| | ||||| ||| | ||||| || ||||||| |
|
|
| T |
4299772 |
tgtctcatcttatctcctttctctcccaccatcaattcattgatcagcttttccacctcctctctcctcacatttgtatcgatttcgattccaatct |
4299676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 209 - 290
Target Start/End: Original strand, 4457715 - 4457796
Alignment:
| Q |
209 |
cctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacattcgtaccaatttccatcccaatct |
290 |
Q |
| |
|
||||| ||||||||||||||||||||||| | ||||||||||| || ||||| ||||| ||| | |||||||||||||||| |
|
|
| T |
4457715 |
cctttttctcccaccatcaattcattgactaacttctccacctcatctctcttcacatttgtatcgatttccatcccaatct |
4457796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 212
Target Start/End: Complemental strand, 4260256 - 4260162
Alignment:
| Q |
118 |
tttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgcctttttcctcatcttctttcctt |
212 |
Q |
| |
|
||||||||||||||| ||||| |||| || || ||| ||||||| |||||| |||||||||| || |||||| ||||||||||||||||| |
|
|
| T |
4260256 |
tttgtccaagttcatcaatgaataaccagatggactggtgttctcctctgccttcctcttcaactccatgaccttttgcctcatcttctttcctt |
4260162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 154
Target Start/End: Complemental strand, 4607027 - 4606957
Alignment:
| Q |
84 |
tttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctc |
154 |
Q |
| |
|
||||||||| ||||||||| |||| ||| |||| ||| ||||||||||| |||||| |||| || |||||| |
|
|
| T |
4607027 |
tttgattttgtttaagcaaaaccttcttaatcactttttccaagttcatgtatgaaaaaccacctggtctc |
4606957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 106; Significance: 5e-53; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 77 - 290
Target Start/End: Complemental strand, 20863986 - 20863773
Alignment:
| Q |
77 |
acttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttct |
176 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||| |||| | ||||| ||| |||||| |||||||||| |
|
|
| T |
20863986 |
acttaagtttgattttgtttaagcaacacctccttaatcactttgtccaagttcatatatgaaccaccttccggtcttgtgtcctcctctgccttcttct |
20863887 |
T |
|
| Q |
177 |
tcaactcgattgcctttttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacattcgtaccaat |
276 |
Q |
| |
|
||||||| ||| ||||| ||||||| || |||||||||||||||||||||||||||| || || ||||||||||||| ||||| ||||| || |||| |
|
|
| T |
20863886 |
tcaactcatttgtcttttgcctcatcctccttcctttctctcccaccatcaattcatttaccagcatctccacctcctctctcttgacattggtgtcaat |
20863787 |
T |
|
| Q |
277 |
ttccatcccaatct |
290 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
20863786 |
ttcgatcccaatct |
20863773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 88 - 291
Target Start/End: Original strand, 1674226 - 1674429
Alignment:
| Q |
88 |
attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt |
187 |
Q |
| |
|
||||| |||||||||||| ||||| |||| ||||||||||||||| ||||||||||| || ||||| ||| ||||||| |||||||||||||| || || |
|
|
| T |
1674226 |
attttgtttaagcaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgccttcttcttcaattccatg |
1674325 |
T |
|
| Q |
188 |
gcctttttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacattcgtaccaatttccatcccaa |
287 |
Q |
| |
|
||||||| ||||||||| ||||| ||||||||||||||||||||||||| ||| ||||||| |||| ||||| ||||||||| |||||||||| |||| |
|
|
| T |
1674326 |
gccttttgcctcatcttttttccattctctcccaccatcaattcattgataagcttctccaaaccctctctcttcacattcgtatcaatttccataccaa |
1674425 |
T |
|
| Q |
288 |
tctt |
291 |
Q |
| |
|
|||| |
|
|
| T |
1674426 |
tctt |
1674429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 57 - 290
Target Start/End: Complemental strand, 16686432 - 16686197
Alignment:
| Q |
57 |
actgctttgcataaaaaa--ttacttaaatttgattttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctc |
154 |
Q |
| |
|
||||| |||||||||||| | ||||| ||||||||| ||||||||| |||||| | |||| ||| ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
16686432 |
actgcattgcataaaaaaagtcacttaggtttgattttgtttaagcaaaacctccataatcactttttccaagttcatgtatgaacaaccaccaggtctc |
16686333 |
T |
|
| Q |
155 |
gtgctctcctccgccttcttcttcaactcgattgcctttttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcct |
254 |
Q |
| |
|
| | || ||| ||||| | | || || ||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| | |
|
|
| T |
16686332 |
gggtcttcgtccaccttcatttgcagttcaattatctttttcctcatcttctttcctttctctcccaccatcaattcattgaccaatttctccacctcat |
16686233 |
T |
|
| Q |
255 |
ccctctttacattcgtaccaatttccatcccaatct |
290 |
Q |
| |
|
| ||||| ||||| || |||||||||| ||||||| |
|
|
| T |
16686232 |
ctctcttcacattggtgtcaatttccatgccaatct |
16686197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 88 - 291
Target Start/End: Complemental strand, 28000231 - 28000028
Alignment:
| Q |
88 |
attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt |
187 |
Q |
| |
|
||||| ||||| |||||| ||||| |||| ||||||||||||||| ||||||||||| || ||||| ||| ||||||| ||||| ||||||||||| || |
|
|
| T |
28000231 |
attttgtttaaacaacacttccttaatcactttgtccaagttcatgtatgaacaaccacctggtctagtgttctcctctgcctttttcttcaactccatg |
28000132 |
T |
|
| Q |
188 |
gcctttttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacattcgtaccaatttccatcccaa |
287 |
Q |
| |
|
||||||| ||||||||| ||||| ||||||||||||||||||||||||| ||| ||||||| ||||| |||| |||||| || |||||||||| |||| |
|
|
| T |
28000131 |
gccttttgcctcatcttttttccattctctcccaccatcaattcattgataagcttctccaaatcctctatcttcacattcatatcaatttccataccaa |
28000032 |
T |
|
| Q |
288 |
tctt |
291 |
Q |
| |
|
|||| |
|
|
| T |
28000031 |
tctt |
28000028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 94 - 237
Target Start/End: Original strand, 24103005 - 24103148
Alignment:
| Q |
94 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt |
193 |
Q |
| |
|
|||||||| |||||||| || | ||||||||||||||| |||||| |||| |||| ||| ||| |||| || ||||||||||| ||||| | ||||| |
|
|
| T |
24103005 |
tttaagcatgacctccttaataactttgtccaagttcatgtatgaaaaaccaccagatcttgtgttctcttctgccttcttcttgaactccaagaccttt |
24103104 |
T |
|
| Q |
194 |
ttcctcatcttctttcctttctctcccaccatcaattcattgac |
237 |
Q |
| |
|
| | ||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
24103105 |
tgcttcatcgtctttccgttctctcccaccatcaattcattgac |
24103148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 94 - 266
Target Start/End: Complemental strand, 3845 - 3673
Alignment:
| Q |
94 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt |
193 |
Q |
| |
|
||||||||| |||||||| || | |||||||| |||||| ||||||| ||| || ||||| ||| ||||||| ||||||||||| ||||| | |||||| |
|
|
| T |
3845 |
tttaagcaaaacctccttaataactttgtccaggttcatgtatgaacgaccacctggtctagtgttctcctctgccttcttctttaactccacggccttt |
3746 |
T |
|
| Q |
194 |
ttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacat |
266 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||||||| || ||||||||||| || ||||| |||| |
|
|
| T |
3745 |
tgcctcatcttctttcctttctctcccaccgtcaattcattgactagcttctccacctcatctctcttcacat |
3673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 94 - 236
Target Start/End: Complemental strand, 4812 - 4670
Alignment:
| Q |
94 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt |
193 |
Q |
| |
|
|||||||| |||||||| |||| ||||||||||||||| |||||||| || |||| || ||| ||||||| ||||||||||||||||| || |||||| |
|
|
| T |
4812 |
tttaagcatgacctccttaatcactttgtccaagttcatgtatgaacagccaccagaactggtgttctcctctgccttcttcttcaactccatggccttt |
4713 |
T |
|
| Q |
194 |
ttcctcatcttctttcctttctctcccaccatcaattcattga |
236 |
Q |
| |
|
| |||||||||| ||||||| |||||| |||||||||||||| |
|
|
| T |
4712 |
tgcctcatcttcattcctttatctcccgacatcaattcattga |
4670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 94 - 290
Target Start/End: Original strand, 3086426 - 3086622
Alignment:
| Q |
94 |
tttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgattgccttt |
193 |
Q |
| |
|
||||||||| |||||||| || | ||||||||||||||| ||||||||||| || || ||| |||| || || |||||||| ||||| | ||| |
|
|
| T |
3086426 |
tttaagcaagacctccttaataactttgtccaagttcatgtatgaacaaccaccgatactggtgttctcttctgctttcttctttaactctgcgacattt |
3086525 |
T |
|
| Q |
194 |
ttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacattcgtaccaatttccatcccaatct |
290 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||||||||||| || ||||| |||||||| ||||| ||||| ||| | ||||| || ||||||| |
|
|
| T |
3086526 |
tgcctcatcttctttcctttatctcccaccatcaattcattgatcagcttctcgacctcctctctcttcacattagtatcgatttcaattccaatct |
3086622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 88 - 291
Target Start/End: Original strand, 1281114 - 1281317
Alignment:
| Q |
88 |
attttatttaagcaacacctccttgatcaatttgtccaagttcatatatgaacaacctccaggtctcgtgctctcctccgccttcttcttcaactcgatt |
187 |
Q |
| |
|
||||| ||||||||||| ||||| |||| |||||| |||||||| ||||||||||| || ||||| ||| ||||||||||| ||||||||| || || |
|
|
| T |
1281114 |
attttgtttaagcaacatttccttaatcactttgtcgaagttcatgtatgaacaaccacccggtctagtgttctcctccgccgccttcttcaattccatg |
1281213 |
T |
|
| Q |
188 |
gcctttttcctcatcttctttcctttctctcccaccatcaattcattgacaagtttctccacctcctccctctttacattcgtaccaatttccatcccaa |
287 |
Q |
| |
|
||||||| ||||| |||||||||| || || | ||||||||||||| | || |||||||||| ||||| ||||| ||| | |||||||| |||| |
|
|
| T |
1281214 |
gccttttctctcatattctttccttcatccccggctatcaattcattgatcaacttagccacctcctctctcttcacatttgtatcgatttccataccaa |
1281313 |
T |
|
| Q |
288 |
tctt |
291 |
Q |
| |
|
|||| |
|
|
| T |
1281314 |
tctt |
1281317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University