View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21299_high_1 (Length: 507)

Name: NF21299_high_1
Description: NF21299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21299_high_1
NF21299_high_1
[»] chr4 (2 HSPs)
chr4 (123-494)||(40821478-40821849)
chr4 (78-267)||(40826117-40826306)
[»] chr7 (14 HSPs)
chr7 (78-462)||(20292021-20292395)
chr7 (86-267)||(20229247-20229428)
chr7 (86-267)||(20261830-20262011)
chr7 (86-258)||(20170355-20170527)
chr7 (86-258)||(20172348-20172520)
chr7 (86-269)||(20271397-20271580)
chr7 (87-282)||(20296617-20296812)
chr7 (95-282)||(20301393-20301580)
chr7 (86-211)||(20286891-20287016)
chr7 (86-180)||(20241284-20241378)
chr7 (95-260)||(20064826-20064991)
chr7 (86-258)||(20281722-20281894)
chr7 (86-210)||(20092383-20092509)
chr7 (275-350)||(20092587-20092660)
[»] scaffold0027 (1 HSPs)
scaffold0027 (239-284)||(135558-135603)


Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 123 - 494
Target Start/End: Original strand, 40821478 - 40821849
Alignment:
Q  123 aatttttagggctaaagaatccaaaggtgaagttaccatctttggagataagagtttcggtgtcctttatgtattgggatgatgtgatgttggttatggc 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  40821478 aatttttagggctaaagaatccaaaggtgaagttaccatctttggagataagagtttcagtgtcctttatgtactgggatgatgtgatgttggttatggc 40821577  T
Q  223 aatactaacttgtaacaaatagcaaaacaaaatgaacagaacagagagcatatttgaacaacgactgaaacacccattatatgatcaacaattagactat 322  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40821578 aatactaacttgtaacaaagtgcaaaacaaaatgaacagaacagagagcatatttgaacaacgactgaaacacccattatatgatcaacaattagactat 40821677  T
Q  323 gatacaaaaacaaccactctttcttattaatgatgatttgagatttccttaaagtcaagagtctaaaaaatcacaagtaaatcatggttcttaaaatctc 422  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40821678 gatacaaaaacaaccactctttcttattaataatgatttgagatttccttaaagtcaagagtctaaaaaatcacaagtaaatcatggttctgaaaatctc 40821777  T
Q  423 tatcattttaaaaacttaacgttgtttgagtcatttcactacttatttaggttatcacttttcttttctttt 494  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40821778 tatcattttaagaacttaatgttgtttgagtcatttcactacttatttaggttatcacttttcttttctttt 40821849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 78 - 267
Target Start/End: Original strand, 40826117 - 40826306
Alignment:
Q  78 ttgtaggctgagacttgcaccaaattccagcgtagcgatttgaagaatttttagggctaaagaatccaaaggtgaagttaccatctttggagataagagt 177  Q
    |||||| ||||||||| |||||||||||| |||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||  |||||    
T  40826117 ttgtagactgagacttccaccaaattccaacgtagcgatttgtagaattcttagggctaaagaatcccaaggtgaagttaccatctttggagagtagagt 40826216  T
Q  178 ttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacagaacaga 267  Q
    ||| | |||||| ||| |||| |||||||||||| ||  ||| |||||||||| |||||   |||||||| ||| ||| |||| ||||||    
T  40826217 ttcagggtccttgatgaattgagatgatgtgatggtgtctattgcaatactaaattgtagggaatagcaacacagaataaacaaaacaga 40826306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 78 - 462
Target Start/End: Complemental strand, 20292395 - 20292021
Alignment:
Q  78 ttgtaggctgagacttgcaccaaattccagcgtagcgatttgaagaatttttagggctaaagaatccaaaggtgaagttaccatctttggagataagagt 177  Q
    |||||| ||||||||| |||||||||||| |||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20292395 ttgtagactgagacttccaccaaattccaacgtagcgatttgtagagtttttaggactaaagaatccaaaggtgaagttaccatctttggagataagagt 20292296  T
Q  178 ttcggtgtcctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacagaacagagagcatattt 277  Q
    ||| | |||||| ||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20292295 ttcagcgtccttgatgaattgggatgatgtgatggtgtttatggcaatattaacttgtaacaaatagcaaaacaaaatgaacagaacagagagcatattt 20292196  T
Q  278 gaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttattaatgatgatttgagatttc---cttaa 374  Q
    ||      ||||||  |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||   |||||    
T  20292195 ga------actgaa--acccattatatgatcaacaagtagactatgatacaaaaa-aaccactctttcttattaataatgatttgagatttccttcttaa 20292105  T
Q  375 agtcaagagtctaaaaaatcacaagtaaatcatggttcttaaaatctctatcattttaaaaacttaacgttgtttgagtcatttcact 462  Q
     |||||||||||||||||||||| ||||||||  ||||| ||||    ||| |||| ||||| |||| ||| |||||| |||||||||    
T  20292104 cgtcaagagtctaaaaaatcacaggtaaatcaaagttctaaaaa----tattatttcaaaaaattaatgttctttgagacatttcact 20292021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 86 - 267
Target Start/End: Complemental strand, 20229428 - 20229247
Alignment:
Q  86 tgagacttgcaccaaattccagcgtagcgatttgaagaatttttagggctaaagaatccaaaggtgaagttaccatctttggagataagagtttcggtgt 185  Q
    |||||||| |||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||    
T  20229428 tgagacttccaccaaattccaacgtagcggtttgtagaatttttagggctaaagaatccaaaggtgaagttaccatctttggagattagagtttcagggt 20229329  T
Q  186 cctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacagaacaga 267  Q
    | || ||  |||| |||||||||||| ||  |||  ||| |||||| |||| |||||||||| |||||||||| | ||||||    
T  20229328 ctttgataaattgagatgatgtgatggtgtctataccaacactaacatgtaccaaatagcaacacaaaatgaataaaacaga 20229247  T

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Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 86 - 267
Target Start/End: Complemental strand, 20262011 - 20261830
Alignment:
Q  86 tgagacttgcaccaaattccagcgtagcgatttgaagaatttttagggctaaagaatccaaaggtgaagttaccatctttggagataagagtttcggtgt 185  Q
    |||||||| |||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | ||    
T  20262011 tgagacttccaccaaattccaacgtagcggtttgtagaatttttagggctaaagaatccaaaggtgaagttaccatctttggagattagagtttcagggt 20261912  T
Q  186 cctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacagaacaga 267  Q
    | || ||  |||| |||||||||||| ||  |||  ||| |||||| |||| |||||||||| |||||||||| | ||||||    
T  20261911 ctttgataaattgagatgatgtgatggtgtctataccaacactaacatgtaccaaatagcaacacaaaatgaatacaacaga 20261830  T

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Target: chr7; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 86 - 258
Target Start/End: Original strand, 20170355 - 20170527
Alignment:
Q  86 tgagacttgcaccaaattccagcgtagcgatttgaagaatttttagggctaaagaatccaaaggtgaagttaccatctttggagataagagtttcggtgt 185  Q
    |||||||| |||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | ||    
T  20170355 tgagacttccaccaaattccaacgtagcggtttgtagaatttttagggctaaagaatccaaaggtgaagttaccgtctttggagattagagtttcagggt 20170454  T
Q  186 cctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaa 258  Q
    | || ||  |||| |||||||||||| ||  |||  ||| |||||| |||| |||||||||| ||||||||||    
T  20170455 ctttgataaattgagatgatgtgatggtgtctataccaacactaacatgtagcaaatagcaacacaaaatgaa 20170527  T

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Target: chr7; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 86 - 258
Target Start/End: Original strand, 20172348 - 20172520
Alignment:
Q  86 tgagacttgcaccaaattccagcgtagcgatttgaagaatttttagggctaaagaatccaaaggtgaagttaccatctttggagataagagtttcggtgt 185  Q
    |||||||| |||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| | ||    
T  20172348 tgagacttccaccaaattccaacgtagcggtttgtagaatttttagggctaaagaatccaaaggtgaagttaccgtctttggagattagagtttcagggt 20172447  T
Q  186 cctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaa 258  Q
    | || ||  |||| |||||||||||| ||  |||  ||| |||||| |||| |||||||||| ||||||||||    
T  20172448 ctttgataaattgagatgatgtgatggtgtctataccaacactaacatgtagcaaatagcaacacaaaatgaa 20172520  T

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Target: chr7; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 86 - 269
Target Start/End: Complemental strand, 20271580 - 20271397
Alignment:
Q  86 tgagacttgcaccaaattccagcgtagcgatttgaagaatttttagggctaaagaatccaaaggtgaagttaccatctttggagataagagtttcggtgt 185  Q
    |||||||| |||||||||||| | ||||| |||| |||||||||||  ||||||||||| |||||||||||||||||||||||| | |||| ||| | ||    
T  20271580 tgagacttccaccaaattccaacatagcggtttgtagaatttttagcactaaagaatcccaaggtgaagttaccatctttggaggttagagcttcagggt 20271481  T
Q  186 cctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacagaacagaga 269  Q
    | || || ||||| |||||||||||| || || |  |||||||||| | ||  |||||||||||||||||||| | ||||||||    
T  20271480 ctttgatatattgagatgatgtgatggtgtttgtaccaatactaacatttagaaaatagcaaaacaaaatgaataaaacagaga 20271397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 87 - 282
Target Start/End: Complemental strand, 20296812 - 20296617
Alignment:
Q  87 gagacttgcaccaaattccagcgtagcgatttgaagaatttttagggctaaagaatccaaaggtgaagttaccatctttggagataagagtttcggtgtc 186  Q
    ||||||| |||||||||||| | |||||||||| ||| ||| |||| |||||| ||||||||||||||||||||||||| ||||| |||||||| | |||    
T  20296812 gagacttccaccaaattccaacatagcgatttgtagagtttataggactaaagcatccaaaggtgaagttaccatcttttgagattagagtttcagggtc 20296713  T
Q  187 ctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacagaacagagagcatatttgaaca 282  Q
    ||| ||| ||||||| ||||| ||  ||  |||||||||||| |  |||||||||| |||||||| |||| | | |||||| | || |||||||||    
T  20296712 cttgatgaattgggaagatgttatagtgtctatggcaatactcatgtgtaacaaattgcaaaacagaatggataaaacagaaaacagatttgaaca 20296617  T

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Target: chr7; HSP #8
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 95 - 282
Target Start/End: Complemental strand, 20301580 - 20301393
Alignment:
Q  95 caccaaattccagcgtagcgatttgaagaatttttagggctaaagaatccaaaggtgaagttaccatctttggagataagagtttcggtgtcctttatgt 194  Q
    |||||||||||| |||||||||||| |||||||| ||||||||||||||||||||   ||  |||||||||||| |  |||||||| | |||||| |||     
T  20301580 caccaaattccaacgtagcgatttgtagaattttcagggctaaagaatccaaaggcataggaaccatctttggaaagtagagtttcagggtccttgatga 20301481  T
Q  195 attgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaacagaacagagagcatatttgaaca 282  Q
    ||||||||||||||||| ||  |||  | ||||||||  ||||||||||| |||||| |||||||| |||| ||| || |||||||||    
T  20301480 attgggatgatgtgatggtgtctataccgatactaacacgtaacaaataggaaaacagaatgaacaaaacaaagaacagatttgaaca 20301393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 86 - 211
Target Start/End: Complemental strand, 20287016 - 20286891
Alignment:
Q  86 tgagacttgcaccaaattccagcgtagcgatttgaagaatttttagggctaaagaatccaaaggtgaagttaccatctttggagataagagtttcggtgt 185  Q
    |||||||| |||||||||||| | |||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||  |||||| | | ||    
T  20287016 tgagacttccaccaaattccaacatagcgatttgtagagtttttagggctaaagaatccaaaggtgaaattaccatctttggagagtagagttccagggt 20286917  T
Q  186 cctttatgtattgggatgatgtgatg 211  Q
    | || ||| |||||||||||||||||    
T  20286916 ctttgatgaattgggatgatgtgatg 20286891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 86 - 180
Target Start/End: Complemental strand, 20241378 - 20241284
Alignment:
Q  86 tgagacttgcaccaaattccagcgtagcgatttgaagaatttttagggctaaagaatccaaaggtgaagttaccatctttggagataagagtttc 180  Q
    |||||||| |||||||||||| ||||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||    
T  20241378 tgagacttccaccaaattccaacgtagcggtttgtagaatttttagggctaaagaatccaaaagtgaagttaccgtctttggagattagagtttc 20241284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 95 - 260
Target Start/End: Original strand, 20064826 - 20064991
Alignment:
Q  95 caccaaattccagcgtagcgatttgaagaatttttagggctaaagaatccaaaggtgaagttaccatctttggagataagagtttcggtgtcctttatgt 194  Q
    ||||||||||||||||||||||||  |||||||  ||||||||||||||||||||   ||  ||||||||||||||  || ||||| | |||||| |||     
T  20064826 caccaaattccagcgtagcgatttatagaatttccagggctaaagaatccaaaggcataggaaccatctttggagagtagtgtttcagggtccttgatga 20064925  T
Q  195 attgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaaca 260  Q
    ||||||||||||||||| ||  |||  | |||||||| |||||||||||  |||||| ||||||||    
T  20064926 attgggatgatgtgatggtgtctataccgatactaacatgtaacaaatacaaaaacacaatgaaca 20064991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 86 - 258
Target Start/End: Complemental strand, 20281894 - 20281722
Alignment:
Q  86 tgagacttgcaccaaattccagcgtagcgatttgaagaatttttagggctaaagaatccaaaggtgaagttaccatctttggagataagagtttcggtgt 185  Q
    |||||||| |||||||||||| | | |||||||| ||||||| || ||||||||||||| |||||||||||||||||||||||||| |||||||| | ||    
T  20281894 tgagacttccaccaaattccaacattgcgatttgtagaatttctacggctaaagaatcccaaggtgaagttaccatctttggagattagagtttcagggt 20281795  T
Q  186 cctttatgtattgggatgatgtgatgttggttatggcaatactaacttgtaacaaatagcaaaacaaaatgaa 258  Q
    | || ||  |||| |||||||| ||  ||  ||   |||||||||| ||||  ||||||||| ||||||||||    
T  20281794 ctttgataaattgagatgatgttatagtgtctacaccaatactaacatgtagtaaatagcaacacaaaatgaa 20281722  T

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Target: chr7; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 86 - 210
Target Start/End: Original strand, 20092383 - 20092509
Alignment:
Q  86 tgagacttgcaccaaattccagcgtagcgatttgaagaatttttagggctaaagaatccaaaggtgaagttaccatctttggagataagagtttcggtgt 185  Q
    |||||||| |||||||||||| |||||||| ||| ||| ||| |||||||||||||||||||||||||||||||| |||||||||| ||| |||| | ||    
T  20092383 tgagacttccaccaaattccaacgtagcgacttgtagagtttgtagggctaaagaatccaaaggtgaagttaccacctttggagattagattttcagggt 20092482  T
Q  186 cc--tttatgtattgggatgatgtgat 210  Q
    ||   | ||| ||||||||||||||||    
T  20092483 ccgtgtgatgaattgggatgatgtgat 20092509  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 350
Target Start/End: Original strand, 20092587 - 20092660
Alignment:
Q  275 tttgaacaacgactgaaacacccattatatgatcaacaattagactatgatacaaaaacaaccactctttcttatt 350  Q
    ||||||||||  |||||||||  ||||| ||||||| | | | | ||||||||| |||||||||||||||||||||    
T  20092587 tttgaacaacacctgaaacac--attatgtgatcaatactaaaagtatgatacataaacaaccactctttcttatt 20092660  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 135558 - 135603
Alignment:
Q  239 aaatagcaaaacaaaatgaacagaacagagagcatatttgaacaac 284  Q
    ||||||||||||||||| |||| |||||||| || |||||||||||    
T  135558 aaatagcaaaacaaaattaacaaaacagagaacacatttgaacaac 135603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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