View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21299_high_13 (Length: 231)
Name: NF21299_high_13
Description: NF21299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21299_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 688219 - 688073
Alignment:
| Q |
1 |
caacttactccacttgtgatatttttgtatacatacatggccaaattgccaattcaacctgcgacaataaaatcaaattctgaatattgtttctattgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
688219 |
caacttactccacttgtgatatttttgtatacatacatggccaaattgccaattcaacctgcgacaataaaatcaaattctgaatattgtttctattgtt |
688120 |
T |
|
| Q |
101 |
ggaacctcactattactatatattattgttagttattattattccgattca |
151 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
688119 |
ggaacctcactattac----tattattgttagttattattattccgattca |
688073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 688047 - 687985
Alignment:
| Q |
147 |
attcattcatttgtactgcggataaagtttctgactagtaattgatttaactcactgaaatgg |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
688047 |
attcattcatttgtactgcggataaagtttctgactagtaattgatttaactcactgaaatgg |
687985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University