View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21299_high_14 (Length: 228)
Name: NF21299_high_14
Description: NF21299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21299_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 213
Target Start/End: Original strand, 511030 - 511228
Alignment:
| Q |
15 |
aaaatcatagcgaagaatcacgaaatgtacttaatatatcatttcatttccaaccagagtgtttggctcatgacgaggttcaacaaaaatatggtaagat |
114 |
Q |
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| T |
511030 |
aaaatcatagcgaagaatcacgaaatgtacttaatatatcatttcatttccaaccagagtgtttggctcatgacgaggttcaacaaaaatatggtaagat |
511129 |
T |
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| Q |
115 |
gaaaggatagtaagaacaaatccatattacaaatcaaagaagaaaatttaatcaaatttgagagcataaaatgttacaaaacaaatttaggctgatttt |
213 |
Q |
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| T |
511130 |
gaaaggatagtaagaacaaatccatattacaaatcaaagaagaaaatttaatcaaatttgagagcataaaatgttacaaaacaaatttaggctgatttt |
511228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 15 - 213
Target Start/End: Complemental strand, 582881 - 582683
Alignment:
| Q |
15 |
aaaatcatagcgaagaatcacgaaatgtacttaatatatcatttcatttccaaccagagtgtttggctcatgacgaggttcaacaaaaatatggtaagat |
114 |
Q |
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||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
582881 |
aaaatcatagcaaagaaccacgaaatgtacttaatatatcatttcatttccaaccagagggtttagctcatgacgaggttcaacaaaaatatggtaagat |
582782 |
T |
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| Q |
115 |
gaaaggatagtaagaacaaatccatattacaaatcaaagaagaaaatttaatcaaatttgagagcataaaatgttacaaaacaaatttaggctgatttt |
213 |
Q |
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||||| |||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
582781 |
gaaagaatagtatgaacagatccatattacaaatcaaagaagaaaattaaatcaaatttgagatcataaaatgttacaaaacaaatttaggttgatttt |
582683 |
T |
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