View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21299_high_2 (Length: 438)
Name: NF21299_high_2
Description: NF21299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21299_high_2 |
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| [»] scaffold0070 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 428
Target Start/End: Original strand, 30759657 - 30760067
Alignment:
| Q |
18 |
caaaattagtttcaaacctgagcgatttctaattgtaattgttccgatgccttctacctcaataggtgctccattcgcaactataaagttataagaaata |
117 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30759657 |
caaaattagtttcaaacctgagtgatttctaattgtaattgttccaatgccttctacctcaataggtgctccattcgcaactataaagttataagaaata |
30759756 |
T |
|
| Q |
118 |
gcagttttgttgagctctttgaaaaagtttcgatcataagtcatgtggtgtgtggcaccactgtcgatatgccaaaagtttgagggtattttggttgtaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30759757 |
gcagttttgttgagctctttgaaaaagtttcgatcataagtcatgtggtgtgtggcaccactgtcgatatgccaaaagtttgagggtattttggttgtaa |
30759856 |
T |
|
| Q |
218 |
gacctgacgttgcaagtagttgttcctttttatcttcctattgcaatcttcacttatgggtattaaattagagtagtttcaattacaaatgattaatttg |
317 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
30759857 |
gacctgacattgcaagtagttgttcctttttatcttcctattgaaatcttcacttatgggtaataaattagagtagtttcagttacaaatgattaatttg |
30759956 |
T |
|
| Q |
318 |
atatgaaactcaaagtaaagtcctgagccaagatacaccctagatgatcataactttggacgcttgtgagaactctctctccaaggtgcaccaaaagtcc |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30759957 |
atatgaaactcaaagtaaagtcctgagccaagatacaccctagatgatcataactttggacgcttgtgagaactctctctccaaggtgcaccaaaggtcc |
30760056 |
T |
|
| Q |
418 |
acaaatctctg |
428 |
Q |
| |
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||||||||||| |
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| T |
30760057 |
acaaatctctg |
30760067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 30749402 - 30749643
Alignment:
| Q |
18 |
caaaattagtttcaaacctgagcgatttctaattgtaattgttccgatgccttctacctcaataggtgctccattcgcaactataaagttataagaaata |
117 |
Q |
| |
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|||||||||||||||||||||| ||| | ||||||||| |||||| | ||||||||||||||| |||||||||||| ||||||||| |||| |||||||| |
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| T |
30749402 |
caaaattagtttcaaacctgagtgatgtttaattgtaactgttccaaagccttctacctcaatgggtgctccattcccaactataatgttacaagaaata |
30749501 |
T |
|
| Q |
118 |
gcagttttgttgagctctttgaaaaagtttcgatcataagtcatgtggtgtgtggcaccactgtcgatatgccaaaagtttgagggtattttggttgtaa |
217 |
Q |
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||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30749502 |
atagttttgttaagctctttgaaaaggcttcgatcataagtcatgtggtgtgtggcaccactgtcgatataccaaaagtttgagggtattttggttgtaa |
30749601 |
T |
|
| Q |
218 |
gacctgacgttgcaagtagttgttcctttttatcttcctatt |
259 |
Q |
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|||||||| |||||||||||||||||||||| |||||||||| |
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| T |
30749602 |
gacctgacattgcaagtagttgttcctttttctcttcctatt |
30749643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 352 - 426
Target Start/End: Original strand, 30749733 - 30749805
Alignment:
| Q |
352 |
acaccctagatgatcataactttggacgcttgtgagaactctctctccaaggtgcaccaaaagtccacaaatctc |
426 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
30749733 |
acaccctagatgatcataactttgaacgcttgtgagaa--ctctctccaaggtgcaccaaaggtccacaaatctc |
30749805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 284 - 351
Target Start/End: Original strand, 30749641 - 30749708
Alignment:
| Q |
284 |
attagagtagtttcaattacaaatgattaatttgatatgaaactcaaagtaaagtcctgagccaagat |
351 |
Q |
| |
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||||||||||||||| |||||||| ||||||||| |||| ||||||||||||| |||| ||||||||| |
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| T |
30749641 |
attagagtagtttcagttacaaattattaatttgttatgcaactcaaagtaaattcctaagccaagat |
30749708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 246
Target Start/End: Complemental strand, 32531480 - 32531346
Alignment:
| Q |
112 |
gaaatagcagttttgttgagctctttgaaaaagtttcgatcataagtcatgtggtgtgtggcaccactgtcgatatgccaaaagtttgagggtattttgg |
211 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||| |||||||| |||||| ||||| || ||| |||||||| ||||| | ||||| ||| || | |
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| T |
32531480 |
gaaatagtacttttgttgagctctttgaataagtctcgatcatgagtcatatggtgcgtacaaccgctgtcgatgagccaatattttgaaggttgctttg |
32531381 |
T |
|
| Q |
212 |
ttgtaagacctgacgttgcaagtagttgttccttt |
246 |
Q |
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||| || | |||| |||||||||||||||||||| |
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| T |
32531380 |
ttgcaaaagttgacattgcaagtagttgttccttt |
32531346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 347 - 426
Target Start/End: Complemental strand, 29823563 - 29823486
Alignment:
| Q |
347 |
aagatacaccctagatgatcataactttggacgcttgtgagaactctctctccaaggtgcaccaaaagtccacaaatctc |
426 |
Q |
| |
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|||| ||||||||| || |||||||||||||| |||||||||| |||| |||||| |||||||| ||||||| ||||| |
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| T |
29823563 |
aagacacaccctagctggtcataactttggacacttgtgagaa--atctcaccaaggcgcaccaaaggtccacatatctc |
29823486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 394
Target Start/End: Original strand, 1608023 - 1608070
Alignment:
| Q |
347 |
aagatacaccctagatgatcataactttggacgcttgtgagaactctc |
394 |
Q |
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|||| ||||||||| || ||||||||||||||||||| |||||||||| |
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| T |
1608023 |
aagacacaccctagctggtcataactttggacgcttgcgagaactctc |
1608070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 394
Target Start/End: Original strand, 20536638 - 20536685
Alignment:
| Q |
347 |
aagatacaccctagatgatcataactttggacgcttgtgagaactctc |
394 |
Q |
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|||| ||||||||| || ||||||||||||||||||| |||||||||| |
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| T |
20536638 |
aagacacaccctagttggtcataactttggacgcttgcgagaactctc |
20536685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0070 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 365 - 420
Target Start/End: Original strand, 58173 - 58226
Alignment:
| Q |
365 |
tcataactttggacgcttgtgagaactctctctccaaggtgcaccaaaagtccaca |
420 |
Q |
| |
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||||||||||||||||||| |||||||||| || |||||||||| || ||||||| |
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| T |
58173 |
tcataactttggacgcttgcgagaactctcact--aaggtgcacccaaggtccaca |
58226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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