View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21299_high_3 (Length: 424)

Name: NF21299_high_3
Description: NF21299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21299_high_3
NF21299_high_3
[»] chr4 (1 HSPs)
chr4 (281-409)||(2431383-2431511)
[»] scaffold0127 (1 HSPs)
scaffold0127 (67-256)||(21183-21367)
[»] chr6 (2 HSPs)
chr6 (67-256)||(5746895-5747078)
chr6 (78-256)||(34093100-34093273)
[»] chr5 (2 HSPs)
chr5 (67-170)||(8987627-8987730)
chr5 (148-256)||(6159827-6159930)
[»] scaffold0620 (1 HSPs)
scaffold0620 (78-256)||(8434-8607)
[»] chr7 (3 HSPs)
chr7 (68-254)||(43344481-43344663)
chr7 (49-132)||(1819724-1819808)
chr7 (68-115)||(30663273-30663320)
[»] chr3 (2 HSPs)
chr3 (118-171)||(4637109-4637162)
chr3 (67-99)||(4637167-4637199)
[»] chr8 (1 HSPs)
chr8 (133-171)||(32422464-32422502)
[»] chr2 (1 HSPs)
chr2 (189-250)||(15817012-15817073)


Alignment Details
Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 281 - 409
Target Start/End: Complemental strand, 2431511 - 2431383
Alignment:
Q  281 taataacaaaaatctaaatagggatggtctatatgagttatatattaaaattggttgtactagttttttgttaccattttcatgaggattgtagactgta 380  Q
    ||||| || ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  2431511 taatagcacaaatctaaatagggtcggtctatatgagttatatattaaaattggttgtactagttttttgttaccattttcatgaggattttagactgta 2431412  T
Q  381 gctttaccagtctggtatatagaataaag 409  Q
    |||||||||||||||||||||||||||||    
T  2431411 gctttaccagtctggtatatagaataaag 2431383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 67 - 256
Target Start/End: Complemental strand, 21367 - 21183
Alignment:
Q  67 aattggttttggtggttttggggttcatgggtgttgaaggtaggtcttaagtgggtgatatgtgtaatttgtgtctttattggtgtttattttgggtgtt 166  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||  ||||||||| |||||||||||| |||| ||||||||||||    
T  21367 aattggttttggtggttgtggggttcatgggtgttgaaggtaggtcttaggtaggtgacgtgtgtaattcgtgtctttattgatgttcattttgggtgtt 21268  T
Q  167 ccgctccgcctatatacgacacttttgtagtctctaatttactagtatctgttcatcttgagtagaaattgagttttaaataaattttgc 256  Q
         ||||||||||||||||| |||||||||||| ||||||  || | ||||| ||||| | ||| || ||||||||||||||||||||    
T  21267 -----ccgcctatatacgacacctttgtagtctctgatttacaggtttttgttcgtcttgtgcagagatcgagttttaaataaattttgc 21183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 6e-41; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 67 - 256
Target Start/End: Original strand, 5746895 - 5747078
Alignment:
Q  67 aattggttttggtggttttggggttcatgggtgttgaaggtaggtcttaagtgggtgatatgtgtaatttgtgtctttattggtgtttattttgggtgtt 166  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||| ||||||||| |||||||||||| |||| ||||| |||||     
T  5746895 aattggttttggtggttgtggggttcatgggtgttgaaggtaggtcttaggtaggtgatgtgtgtaattcgtgtctttattgatgttcattttaggtgt- 5746993  T
Q  167 ccgctccgcctatatacgacacttttgtagtctctaatttactagtatctgttcatcttgagtagaaattgagttttaaataaattttgc 256  Q
        |||||||||||||||| | |||||||||| | || |||  || ||||||| ||||| ||||| || ||||||||||||||||||||    
T  5746994 ----tccgcctatatacgacgcctttgtagtct-tgatctacaggtttctgttcgtcttgtgtagagatcgagttttaaataaattttgc 5747078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 78 - 256
Target Start/End: Original strand, 34093100 - 34093273
Alignment:
Q  78 gtggttttggggttcatgggtgttgaaggtaggtcttaagtgggtgatatgtgtaatttgtgtctttattggtgtttattttgggtgttccgctccgcct 177  Q
    |||||| | |||||||||||||||||||| |||||||| ||||||||| |||||| |||||||||||||||||||||||||||||| ||| |||     |    
T  34093100 gtggttgtagggttcatgggtgttgaaggcaggtcttaggtgggtgatgtgtgtattttgtgtctttattggtgtttattttgggtattcagct-----t 34093194  T
Q  178 atatacgacacttttgtagtctctaatttactagtatctgttcatcttgagtagaaattgagttttaaataaattttgc 256  Q
    ||||||||  |||||||||| | ||||| ||  || ||| ||| |||| |||||| || ||||||||||||||||||||    
T  34093195 atatacgatgcttttgtagtatataattaaccggtctctattcgtctttagtagagatcgagttttaaataaattttgc 34093273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 67 - 170
Target Start/End: Complemental strand, 8987730 - 8987627
Alignment:
Q  67 aattggttttggtggttttggggttcatgggtgttgaaggtaggtcttaagtgggtgatatgtgtaatttgtgtctttattggtgtttattttgggtgtt 166  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||| | |||||| || ||||||||||||||||||||||||||||||    
T  8987730 aattggttttggtggtggtggggttcatgggtgttgaaggtaggtcttaggtgggtgctgtgtgtatttcgtgtctttattggtgtttattttgggtgtt 8987631  T
Q  167 ccgc 170  Q
    ||||    
T  8987630 ccgc 8987627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 256
Target Start/End: Original strand, 6159827 - 6159930
Alignment:
Q  148 ggtgtttattttgggtgttccgctccgcctatatacgacacttttgtagtctctaatttactagtatctgttcatcttgagtagaaattgagttttaaat 247  Q
    ||||||||||||||||||||||     |||||||||  | | |||||||||||| ||| |||| | |||| || ||||||||||  || ||||||| |||    
T  6159827 ggtgtttattttgggtgttccg-----cctatatacagcgcctttgtagtctctgattcactaatctctgctcgtcttgagtagggatcgagtttttaat 6159921  T
Q  248 aaattttgc 256  Q
    ||| |||||    
T  6159922 aaaatttgc 6159930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0620 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 78 - 256
Target Start/End: Original strand, 8434 - 8607
Alignment:
Q  78 gtggttttggggttcatgggtgttgaaggtaggtcttaagtgggtgatatgtgtaatttgtgtctttattggtgtttattttgggtgttccgctccgcct 177  Q
    |||||| | |||||||||||||||||||| |||||||| ||||||||| |||||| |||||||||||||||||||||||||||||| ||| |||     |    
T  8434 gtggttgtagggttcatgggtgttgaaggcaggtcttaggtgggtgatgtgtgtattttgtgtctttattggtgtttattttgggtattcagct-----t 8528  T
Q  178 atatacgacacttttgtagtctctaatttactagtatctgttcatcttgagtagaaattgagttttaaataaattttgc 256  Q
    ||||||||  |||||||||| | ||||| ||  || ||| ||| |||| |||||| || ||||||||||||||||||||    
T  8529 atatacgatgcttttgtagtatataattaaccggtctctattcgtctttagtagagatcgagttttaaataaattttgc 8607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 68 - 254
Target Start/End: Complemental strand, 43344663 - 43344481
Alignment:
Q  68 attggttttggtggttttggggttcat-gggtgttgaaggtaggtcttaagtgggtgatatgtgtaatttgtgtctttattggtgtttattttgggtgtt 166  Q
    |||||| || |||||| |||||||||| |||||||||||| |||||||| || |||||  |||||| ||||||||||||||||||||||||||| || |     
T  43344663 attggtgtttgtggttgtggggttcattgggtgttgaaggcaggtcttaggtaggtgacgtgtgtattttgtgtctttattggtgtttattttgagttt- 43344565  T
Q  167 ccgctccgcctatatacgacacttttgtagtctctaatttactagtatctgttcatcttgagtagaaattgagttttaaataaatttt 254  Q
        |||||||||||||| ||| ||||||||||||  |||||  || ||| ||| ||||||| ||  || ||||||||||||||||||    
T  43344564 ----tccgcctatatacggcacatttgtagtctctggtttaccggtctctattcgtcttgagcagggatcgagttttaaataaatttt 43344481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 49 - 132
Target Start/End: Complemental strand, 1819808 - 1819724
Alignment:
Q  49 agtttgttttagatagtgaa-ttggttttggtggttttggggttcatgggtgttgaaggtaggtcttaagtgggtgatatgtgta 132  Q
    |||||||||||| ||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||| |||||| ||||||    
T  1819808 agtttgttttaggtagtgaaattggtttttgtggttatggggttcatgggtgttgaaggtaggtcttaagtaggtgatgtgtgta 1819724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 30663273 - 30663320
Alignment:
Q  68 attggttttggtggttttggggttcatgggtgttgaaggtaggtctta 115  Q
    |||||||||||||||| |||| || ||||||||||| |||||||||||    
T  30663273 attggttttggtggttgtgggctttatgggtgttgatggtaggtctta 30663320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 4637162 - 4637109
Alignment:
Q  118 tgggtgatatgtgtaatttgtgtctttattggtgtttattttgggtgttccgct 171  Q
    |||||||| ||||||||| ||||| || |||||||||||||| |||||||||||    
T  4637162 tgggtgatgtgtgtaattcgtgtcgtttttggtgtttattttaggtgttccgct 4637109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 4637199 - 4637167
Alignment:
Q  67 aattggttttggtggttttggggttcatgggtg 99  Q
    |||||||||||||||||||||||||||| ||||    
T  4637199 aattggttttggtggttttggggttcataggtg 4637167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 32422502 - 32422464
Alignment:
Q  133 atttgtgtctttattggtgtttattttgggtgttccgct 171  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  32422502 atttgtgtctttattggtctttattttggatgttccgct 32422464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 250
Target Start/End: Complemental strand, 15817073 - 15817012
Alignment:
Q  189 ttttgtagtctctaatttactagtatctgttcatcttgagtagaaattgagttttaaataaa 250  Q
    ||||||||||||||||| ||| || ||||||||||||||| ||| ||  |||||| ||||||    
T  15817073 ttttgtagtctctaattgactggtctctgttcatcttgagcagagatctagtttttaataaa 15817012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University