View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21299_high_5 (Length: 345)
Name: NF21299_high_5
Description: NF21299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21299_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 34318259 - 34317940
Alignment:
| Q |
18 |
gtccaaaggtgttgaagctgactcaatacccaaaagtaagtttctttggtagatttccatatcagaagcgcagccaagattaaattttggtgtttttaaa |
117 |
Q |
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| T |
34318259 |
gtccaaaggtgttgaagctgactcaatacccaaaagtaagtttctttggtagatttccatatcagaagcgcagccaagattaaattttggtgtttttaaa |
34318160 |
T |
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| Q |
118 |
ctcaaatttgaagtgaaaatgatatcgcttttggactgactaggaaaggtatcaactgaagacaccgttgaattcacaggtctaatgtaatcacttttgt |
217 |
Q |
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| T |
34318159 |
ctcaaatttgaagtgaaaatgatatcgcttttggactgactaggaaaggtatcaactgaagacaccgttgaattcacaggtctaatgtaatcacttttgt |
34318060 |
T |
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| Q |
218 |
aactggagggattggaattaattgatagtgatcggtcattttggaagtgttgctgtgtaacatttaatggcaaatggctgagattatcctttaattgtac |
317 |
Q |
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| T |
34318059 |
aaccggagggattggaattaattgatagtgatcggtcattttggaagtgttgctgtgtaacatttaatggcaaatggctgagattatcctttaattgtac |
34317960 |
T |
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| Q |
318 |
aagtgtgttaagttcatctc |
337 |
Q |
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| T |
34317959 |
aagtgtgttaagttcttctc |
34317940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 144 - 325
Target Start/End: Complemental strand, 26376159 - 26375978
Alignment:
| Q |
144 |
gcttttggactgactaggaaaggtatcaactgaagacaccgttgaattcacaggtctaatgtaatcacttttgtaactggagggattggaattaattgat |
243 |
Q |
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| T |
26376159 |
gcttttggacggactagaaaaggtatcatctgaagacatcattgaattcacagaactaatgtaatcactgttgtaatgagagggattagaattaattgaa |
26376060 |
T |
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| Q |
244 |
agtgatcggtcattttggaagtgttgctgtgtaacatttaatggcaaatggctgagattatcctttaattgtacaagtgtgt |
325 |
Q |
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| T |
26376059 |
attgattggtaaatttggaagtgttgttgtgtaacatttaatggcaaatggatgagattgtcctttaattgtacaagtgtgt |
26375978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 35680779 - 35680681
Alignment:
| Q |
143 |
cgcttttggactgactaggaaaggtatcaactgaagacaccgttgaattcacaggtctaatgtaatcacttttgtaactggagggattggaattaattg |
241 |
Q |
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| T |
35680779 |
cgcttttggactgactaggaaaggtatcaactgatgacaccattgaattcacaagattaatctaatcactgttgtaatgggagggattggaattaattg |
35680681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 258 - 325
Target Start/End: Complemental strand, 35680683 - 35680613
Alignment:
| Q |
258 |
ttggaagtgttgctgtgtaacatttaatggcaaatggctgag---attatcctttaattgtacaagtgtgt |
325 |
Q |
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|||||||||||| |||||||||||||| |||||||||| ||| || |||||||||||||||||||||| |
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| T |
35680683 |
ttggaagtgttgttgtgtaacatttaacggcaaatggcggagtaatttgtcctttaattgtacaagtgtgt |
35680613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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