View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21299_high_6 (Length: 332)
Name: NF21299_high_6
Description: NF21299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21299_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 14 - 290
Target Start/End: Complemental strand, 1325159 - 1324877
Alignment:
| Q |
14 |
agagtaccaaacaaaaatagtagcaagttgaatgataaatgtgaattaatatgatcttatcttctgtgcatcacaagtggtgagtttttaaatacccaac |
113 |
Q |
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| T |
1325159 |
agagtaccaaacaaaaatagtaccaagttgaatgataaatgtgaattaatatgaccttattttctgtgcatcacaagtggtgagtttttaaatacccaac |
1325060 |
T |
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| Q |
114 |
tttgtgcatgcattcactattattgccattggtgtgcatctattgcattttcttatgatggccgatgtacccgtgctgttacagaaata-----gtatta |
208 |
Q |
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| T |
1325059 |
tttgtgcatgcattcactatt------attggtgtgcatctattgcattttcttatgatggccgatgtacccgtgctgttacagaaatagtactgtatta |
1324966 |
T |
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| Q |
209 |
ttttcttttttggggttgtgggattgtatatataattcaagtacattc----------tgtcttctcggccttagttcaaggttgtaatgat |
290 |
Q |
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| T |
1324965 |
ttttcttttttggggttgtgggatt---tgtataattctagtacattctgtcttcttttgtcttctcggccttagttcaaggttgtaatgat |
1324877 |
T |
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