View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21299_low_4 (Length: 396)
Name: NF21299_low_4
Description: NF21299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21299_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 13 - 215
Target Start/End: Complemental strand, 36167551 - 36167366
Alignment:
| Q |
13 |
aatatctgtccataccggttgcatgtcactaaaatatataaaaataatcgtttcattttcctttttnnnnnnntttcggaaataaacgtgttatatttaa |
112 |
Q |
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| T |
36167551 |
aatatctgtccataccggttgcatgtcactaaaatatataaaaataatcgtttcattttccttttt-----------------aaacgtgttatatttaa |
36167469 |
T |
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| Q |
113 |
attagttacatatagactttcaaatcccgtgatgagaaattcaaaacatggcagatggcacacatcatcattcctctctagaatagtcattgccccatat |
212 |
Q |
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| T |
36167468 |
attagttaaatatagactttcaaatcccgtgatgagaaattcaaaacatggcagatggcacacatcatcattcctctctagaatagtcattgccccatat |
36167369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 236 - 380
Target Start/End: Complemental strand, 36167340 - 36167196
Alignment:
| Q |
236 |
tattgatgcaggcattagtttacgtgcaggtatccaaatgtataatgtagcctttttcatacgcattttaccgaaagtgcatggatttcaaattcaaagt |
335 |
Q |
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| T |
36167340 |
tattgatgcaggcattagtttacgtgcaggtatccaaatgtataatgtagcctttttcatacgcattttaccgaaagtgcatggatttcacattcaaagt |
36167241 |
T |
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| Q |
336 |
caagagggaaggaatgaatatgtgaatccaaagtataacgtagcc |
380 |
Q |
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| T |
36167240 |
caagagggaaggaatgaatatatgaatccaaagtataatgtagcc |
36167196 |
T |
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