View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21299_low_5 (Length: 375)
Name: NF21299_low_5
Description: NF21299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21299_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 11 - 359
Target Start/End: Complemental strand, 29206357 - 29206009
Alignment:
| Q |
11 |
caaaggtagcagattgtgtttgtaaactggatctgccagtttgaccagtggagaaccagttgaattggtaaaaaggtggaaaagttgtcatcttatttta |
110 |
Q |
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| T |
29206357 |
caaaggtagcagattgtgtttgtaaactggatctgccagtttgaccagtggagaaccagttgaattggtaaaaaggtggaaaagttgtcatcttatttta |
29206258 |
T |
|
| Q |
111 |
cttagaagacataacatagtcaattatattaaattaaattaaattattttcctatgttgagtactattaatcaccatgggaaaataatttttcctatgtt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29206257 |
cttagaagacataacatagtcaattatattaaattaaattaaattattttcctatgttgagtactattaatcaccataggaaaataatttttcctatgtt |
29206158 |
T |
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| Q |
211 |
cgggtcaagtccactgtcactgatctggactctgaaccacctccaagaacccctatgttgcacctcgatcatctaatggagcttccctatcctttggaag |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
29206157 |
cgggtcaagtccactgtcactgatctggactctgaaccacctccaagaacccctatgttgcacctcgatcatctaatggagcttccctatccttcggaag |
29206058 |
T |
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| Q |
311 |
acaatttcgtcccttcacgggcacgcgtcatgttgtcccctctaaaaat |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29206057 |
acaatttcgtcccttcacgggcacgcgtcatgttgtcccctctaaaaat |
29206009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 11 - 359
Target Start/End: Original strand, 12645501 - 12645866
Alignment:
| Q |
11 |
caaaggtagcagattgtgtttgtaaactggatctgccagtttgaccagtggagaaccagttgaattggtaaaaaggtggaaaagttgtcat--------- |
101 |
Q |
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| T |
12645501 |
caaaggtagcagattgtttttgtaaactggatctgccagtttgaccagtggagaaccagttgaattggtaaaaaggtggaaaagttgtcattatttttca |
12645600 |
T |
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| Q |
102 |
-------------cttattttacttagaagacataacatagtcaattatattaaattaaattaaattattttcctatgttgagtactattaatcaccatg |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| | |
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| T |
12645601 |
tattatttatcatcttattttacttagaagacataacatagtcaattatattaatttaa-----attattttcctatgttgagtactattaatcaccgta |
12645695 |
T |
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| Q |
189 |
ggaaaataatttttcctatgttcgggtcaagtccactgtcactgatctggactctgaaccacctccaagaacccctatgttgcacctcgatcatctaatg |
288 |
Q |
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||||||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||| |
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| T |
12645696 |
ggaaaataatttttcctatgttcagatcaagtccactgtcactgatctggactttgaaccaccttcaagaacccctatgttgcacctctatcatctaatg |
12645795 |
T |
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| Q |
289 |
gagcttccctatcctttggaagacaatttcgtcccttcacgggcacgcgtcatgttgtcccctctaaaaat |
359 |
Q |
| |
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||||||||||||| || ||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
12645796 |
gagcttccctatcgttcggaagacaatttcctcccttcacgggcaagcgtcatgttgtcccctctaaaaat |
12645866 |
T |
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