View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21299_low_9 (Length: 280)

Name: NF21299_low_9
Description: NF21299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21299_low_9
NF21299_low_9
[»] chr6 (19 HSPs)
chr6 (76-280)||(12210672-12210876)
chr6 (88-280)||(12163641-12163833)
chr6 (145-278)||(12163953-12164086)
chr6 (145-278)||(12164211-12164344)
chr6 (88-280)||(12163482-12163674)
chr6 (88-231)||(12163293-12163436)
chr6 (157-280)||(12163203-12163326)
chr6 (144-231)||(12163289-12163376)
chr6 (97-194)||(12163362-12163459)
chr6 (100-280)||(12163335-12163515)
chr6 (163-280)||(12211017-12211131)
chr6 (84-171)||(12163190-12163277)
chr6 (163-230)||(12179161-12179231)
chr6 (163-230)||(12164328-12164395)
chr6 (163-197)||(12192329-12192363)
chr6 (103-171)||(12163971-12164039)
chr6 (103-171)||(12164229-12164297)
chr6 (163-207)||(12210858-12210902)
chr6 (244-280)||(12210999-12211035)


Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 76 - 280
Target Start/End: Original strand, 12210672 - 12210876
Alignment:
Q  76 aagaaggaatacaaatacccttctcctccaccaccagtatacaagtacaaatcaactcctccacctgtatataagtatcaatctcccccaccaccagttt 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  12210672 aagaaggaatacaaatacccttctcctccaccaccagtatacaagtacaaatcacctcctccaccggtatataagtatcaatctcccccaccaccagttt 12210771  T
Q  176 acaagtacaagtcacctcctcccccagtttacaagtacaaatctccacccccaccacccaagaaaccatacaagtattcatcaccaccaccaccagttta 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12210772 acaagtacaagtcacctcctcccccagtttacaagtacaaatctccacccccaccacccaagaaaccatacaagtattcatcaccaccaccaccagttta 12210871  T
Q  276 caagt 280  Q
    |||||    
T  12210872 caagt 12210876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 88 - 280
Target Start/End: Original strand, 12163641 - 12163833
Alignment:
Q  88 aaatacccttctcctccaccaccagtatacaagtacaaatcaactcctccacctgtatataagtatcaatctcccccaccaccagtttacaagtacaagt 187  Q
    |||||||| ||||| ||||||||||| ||||||||||||||| ||||||| || || || |||||| ||||||| |||||||||||||||||||| ||||    
T  12163641 aaatacccatctcccccaccaccagtttacaagtacaaatcacctcctcctccagtttacaagtataaatctcctccaccaccagtttacaagtataagt 12163740  T
Q  188 cacctcctcccccagtttacaagtacaaatctccacccccaccacccaagaaaccatacaagtattcatcaccaccaccaccagtttacaagt 280  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12163741 cacctcctcccccagtttacaagtacaaatctccaccaccaccacccaagaaaccatacaagtatccatcaccaccaccaccagtttacaagt 12163833  T

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Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 145 - 278
Target Start/End: Original strand, 12163953 - 12164086
Alignment:
Q  145 tataagtatcaatctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatctccacccccaccacccaagaaaccat 244  Q
    |||||||| | ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12163953 tataagtacccatcaccaccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatctccaccaccaccacccaagaaaccat 12164052  T
Q  245 acaagtattcatcaccaccaccaccagtttacaa 278  Q
    |||||||| |||||||||||||||||||||||||    
T  12164053 acaagtatccatcaccaccaccaccagtttacaa 12164086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 145 - 278
Target Start/End: Original strand, 12164211 - 12164344
Alignment:
Q  145 tataagtatcaatctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatctccacccccaccacccaagaaaccat 244  Q
    |||||||| | ||| || ||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  12164211 tataagtacccatcaccaccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagtacaaatctccaccaccaccacccaagaaaccat 12164310  T
Q  245 acaagtattcatcaccaccaccaccagtttacaa 278  Q
    |||||||  |||||||||||||||| ||||||||    
T  12164311 acaagtacccatcaccaccaccacccgtttacaa 12164344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 88 - 280
Target Start/End: Original strand, 12163482 - 12163674
Alignment:
Q  88 aaatacccttctcctccaccaccagtatacaagtacaaatcaactcctccacctgtatataagtatcaatctcccccaccaccagtttacaagtacaagt 187  Q
    |||||||| ||||| ||||| ||||| ||||||||||||||| |||| ||||| || || |||||  ||||||| |||||||||||||||||||| || |    
T  12163482 aaatacccatctccaccaccgccagtttacaagtacaaatcacctccaccaccggtgtacaagtacaaatctcctccaccaccagtttacaagtataaat 12163581  T
Q  188 cacctcctcccccagtttacaagtacaaatctccacccccaccacccaagaaaccatacaagtattcatcaccaccaccaccagtttacaagt 280  Q
    | |||||||| ||||| ||||||||||| ||||| || |||||||| || || ||||| || ||  |||| || |||||||||||||||||||    
T  12163582 cccctcctccaccagtgtacaagtacaagtctcctccaccaccaccaaaaaagccatataaatacccatctcccccaccaccagtttacaagt 12163674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 88 - 231
Target Start/End: Original strand, 12163293 - 12163436
Alignment:
Q  88 aaatacccttctcctccaccaccagtatacaagtacaaatcaactcctccacctgtatataagtatcaatctcccccaccaccagtttacaagtacaagt 187  Q
    ||||| || ||||| ||||||||||| ||||||||||| ||| |||||||||| || || |||||| ||||||| ||||||||||||||||||||||| |    
T  12163293 aaatatccatctccaccaccaccagtttacaagtacaagtcacctcctccaccagtttacaagtataaatctcctccaccaccagtttacaagtacaaat 12163392  T
Q  188 cacctcctcccccagtttacaagtacaaatctccacccccacca 231  Q
    |||||||||| || || |||||||| ||||| || || ||||||    
T  12163393 cacctcctccaccggtgtacaagtataaatcccctcctccacca 12163436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 157 - 280
Target Start/End: Original strand, 12163203 - 12163326
Alignment:
Q  157 tctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatctccacccccaccacccaagaaaccatacaagtattcat 256  Q
    ||||| ||||| ||||||||||||||||| ||||||||||| ||||| || ||||| || ||||| || |||||||| ||||| ||||| || ||| |||    
T  12163203 tctcctccacctccagtttacaagtacaaatcacctcctccaccagtgtataagtataagtctcctcctccaccaccgaagaagccatataaatatccat 12163302  T
Q  257 caccaccaccaccagtttacaagt 280  Q
    | ||||||||||||||||||||||    
T  12163303 ctccaccaccaccagtttacaagt 12163326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 12163289 - 12163376
Alignment:
Q  144 atataagtatcaatctcccccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatctccacccccacca 231  Q
    |||||| |||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| || ||||||    
T  12163289 atataaatatccatctccaccaccaccagtttacaagtacaagtcacctcctccaccagtttacaagtataaatctcctccaccacca 12163376  T

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Target: chr6; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 12163362 - 12163459
Alignment:
Q  97 tctcctccaccaccagtatacaagtacaaatcaactcctccacctgtatataagtatcaatctcccccaccaccagtttacaagtacaagtcacctcc 194  Q
    ||||||||||||||||| ||||||||||||||| |||||||||| || || |||||| |||| || || |||||||| |||||||||||||| |||||    
T  12163362 tctcctccaccaccagtttacaagtacaaatcacctcctccaccggtgtacaagtataaatcccctcctccaccagtgtacaagtacaagtctcctcc 12163459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 100 - 280
Target Start/End: Original strand, 12163335 - 12163515
Alignment:
Q  100 cctccaccaccagtatacaagtacaaatcaactcctccacctgtatataagtatcaatctcccccaccaccagtttacaagtacaagtcacctcctcccc 199  Q
    ||||| |||||||| |||||||| |||||  |||| ||||| || || |||||  |||| || || ||||| || |||||||| || || |||||||| |    
T  12163335 cctcctccaccagtttacaagtataaatctcctccaccaccagtttacaagtacaaatcacctcctccaccggtgtacaagtataaatcccctcctccac 12163434  T
Q  200 cagtttacaagtacaaatctccacccccaccacccaagaaaccatacaagtattcatcaccaccaccaccagtttacaagt 280  Q
    |||| ||||||||||| ||||| || |||||||| ||||| ||||| || ||  |||| |||||||| |||||||||||||    
T  12163435 cagtgtacaagtacaagtctcctccaccaccacctaagaagccatataaatacccatctccaccaccgccagtttacaagt 12163515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 163 - 280
Target Start/End: Original strand, 12211017 - 12211131
Alignment:
Q  163 ccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatctccacccccaccacccaagaaaccatacaagtattcatcaccac 262  Q
    ||||||||||| |||||||| |||||||||||||| ||   ||||||||||  |||||| || ||||| || |||||||||||||||||  |||| ||||    
T  12211017 ccaccaccagtctacaagtataagtcacctcctcctcc---ttacaagtactcatctccccctccacctccaaagaaaccatacaagtacccatctccac 12211113  T
Q  263 caccaccagtttacaagt 280  Q
    |||| |||||||||||||    
T  12211114 cacccccagtttacaagt 12211131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 12163190 - 12163277
Alignment:
Q  84 atacaaatacccttctcctccaccaccagtatacaagtacaaatcaactcctccacctgtatataagtatcaatctcccccaccacca 171  Q
    |||||||||| ||||||||||||| ||||| ||||||||||||||| |||||||||| || ||||||||| | ||||| || ||||||    
T  12163190 atacaaatacgcttctcctccacctccagtttacaagtacaaatcacctcctccaccagtgtataagtataagtctcctcctccacca 12163277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 12179161 - 12179231
Alignment:
Q  163 ccaccaccagtttacaagtacaagt---cacctcctcccccagtttacaagtacaaatctccacccccacc 230  Q
    |||||||||||||||||||||||||   ||||||| || ||||||||||||||||| || ||||| |||||    
T  12179161 ccaccaccagtttacaagtacaagtccccacctccaccaccagtttacaagtacaagtccccacctccacc 12179231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 230
Target Start/End: Original strand, 12164328 - 12164395
Alignment:
Q  163 ccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatctccacccccacc 230  Q
    |||||||| |||||||| || ||||| |||||||| |||||||||||||| |||||||| || |||||    
T  12164328 ccaccacccgtttacaaatataagtcccctcctccaccagtttacaagtataaatctcctcctccacc 12164395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 197
Target Start/End: Original strand, 12192329 - 12192363
Alignment:
Q  163 ccaccaccagtttacaagtacaagtcacctcctcc 197  Q
    ||||||||||||||||||||||||||||| |||||    
T  12192329 ccaccaccagtttacaagtacaagtcaccccctcc 12192363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 12163971 - 12164039
Alignment:
Q  103 ccaccaccagtatacaagtacaaatcaactcctccacctgtatataagtatcaatctcccccaccacca 171  Q
    ||||||||||| ||||||||||| ||| ||||||| || || || |||||  ||||||| |||||||||    
T  12163971 ccaccaccagtttacaagtacaagtcacctcctcccccagtttacaagtacaaatctccaccaccacca 12164039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 12164229 - 12164297
Alignment:
Q  103 ccaccaccagtatacaagtacaaatcaactcctccacctgtatataagtatcaatctcccccaccacca 171  Q
    ||||| ||||| ||||||||||||||| ||||||| || || || |||||  ||||||| |||||||||    
T  12164229 ccaccgccagtttacaagtacaaatcacctcctcctccagtttacaagtacaaatctccaccaccacca 12164297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 12210858 - 12210902
Alignment:
Q  163 ccaccaccagtttacaagtacaagtcacctcctcccccagtttac 207  Q
    |||||||||||||||||||| ||||| |||||||| || ||||||    
T  12210858 ccaccaccagtttacaagtataagtctcctcctccacctgtttac 12210902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 280
Target Start/End: Original strand, 12210999 - 12211035
Alignment:
Q  244 tacaagtattcatcaccaccaccaccagtttacaagt 280  Q
    |||||||| |||||||||||||||||||| |||||||    
T  12210999 tacaagtactcatcaccaccaccaccagtctacaagt 12211035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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