View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2129_high_3 (Length: 454)
Name: NF2129_high_3
Description: NF2129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2129_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 5 - 382
Target Start/End: Complemental strand, 49916242 - 49915872
Alignment:
| Q |
5 |
gtgagatgaatggtaaatagtaagtatgctactaatcctactatatactctctccatacaaagtttaagcacaattctttctttattgtaaaagtatatt |
104 |
Q |
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| T |
49916242 |
gtgaaatgaatggtaaatagtaagtatgctactaatcctactatatactctctacatacaaagtttaagcacaattcttt----attgtaaaagtatatt |
49916147 |
T |
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| Q |
105 |
tctaatgtggtgtcattctcatctttgctttggccaccaatcaccataagatatatgtaacaggtgaggtgtgcttgtttgacaatgaaaggtgtgatta |
204 |
Q |
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| T |
49916146 |
tctaatgtggtgtcattctcatctttgctttggccaccaatcaccataagataaatgtaacaggtgaggtgggcttgtttgacaatgaaag--gtgatta |
49916049 |
T |
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| Q |
205 |
aacgtcataataaccatttgactcacaattatggggtctagttagtaattaggctgcaaataaacaaattagaatttgcatagtaacagtttg--tacca |
302 |
Q |
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| T |
49916048 |
aacgtcataataaccatttgactcacaattatggggtctagttagtaattaggctgcaaataaacaaattagaatttgcatagtaacagtttgtatacca |
49915949 |
T |
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| Q |
303 |
agaaatgaccnnnnnnntaaagcaagagtatttcataacttcgttaaaacaacaacaacaactgaccaaattaatgaatt |
382 |
Q |
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| T |
49915948 |
agaaatgaccaaaaaaataaagcaagagtatttcataacttcgttaa---aacaacaacaactgaccaaattaatgaatt |
49915872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 390 - 436
Target Start/End: Complemental strand, 49915850 - 49915804
Alignment:
| Q |
390 |
tgacaattactcttcgtacaaggtcggtgattaacaactgctgcaat |
436 |
Q |
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| T |
49915850 |
tgacaattactcttcgtacaaggtcagtgattaacaactgctgcaat |
49915804 |
T |
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