View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2129_low_1 (Length: 730)
Name: NF2129_low_1
Description: NF2129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2129_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 10812280 - 10811970
Alignment:
| Q |
1 |
atctaccctgaagaaagcaacttcaaagaacacaaaaacaagggatcatcgcttgaaaagggtacaaaacatagcacaaatctagctcaagcacaaaagc |
100 |
Q |
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| T |
10812280 |
atctaccctgaagaaagcaacttcaaagaacacaaaaataagggatcatcgcttgaaaagggtacaaaacgtagcacaaatctagctcaagcacaaaagc |
10812181 |
T |
|
| Q |
101 |
ttcacaggttgggattctcttacattgcaacatcttttctttacatagtaattaaggttaaagcattttacaatggtttccttggagatgttgctagtga |
200 |
Q |
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| T |
10812180 |
ttcacaggttgggattctcttacattgcaacatcttttctttacatagtaattaaggttaaagaattttacaatggtttccttggagatgttgctagtga |
10812081 |
T |
|
| Q |
201 |
atcaaggatgatgggaattgatgcaccaatggcagaaccatatttctctgttccagttattccaaattaaccaagtacaaatattagaagcaatatcatg |
300 |
Q |
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| T |
10812080 |
atcaaggatgatgggaattgatgcaccaatggcagaaccatatttctctgttccagttattccaaatt----------aaataataggagcaatatcatg |
10811991 |
T |
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| Q |
301 |
catgattgtaatgtctagtat |
321 |
Q |
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| T |
10811990 |
catgattataatgtctagtat |
10811970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 380 - 713
Target Start/End: Complemental strand, 10811915 - 10811581
Alignment:
| Q |
380 |
tagtatcaaatttgaggtgaacttttgtagtaattaattagcacagatttgcttaaatgttccctacttttgtagtaaaattacatatttatgtaatgaa |
479 |
Q |
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| T |
10811915 |
tagtatcaaatttgaggtgaacttttgtagtaattaattagcacagatttgcttaaatgttccctacttttgaagtaaaattacatatttatgtaatgaa |
10811816 |
T |
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| Q |
480 |
gtattgaatgtaatatttaaccaaaatatatattagtgttattttggtgc-------tatacattggtaacnnnnnnnnnnnnnnnngccaaaagctggt |
572 |
Q |
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| T |
10811815 |
gtaatgaatgtaatatttaaacaaa----atattagtaatattttggtgctatattatatacattgataac--ttttttattttgttgccaaaagctggt |
10811722 |
T |
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| Q |
573 |
taacctcaatattgtggctgtttgtgtttagcaaattgcacaactcaaataaattgaggtgttcaacattgtgtacaaa-ggaacttttcattttataag |
671 |
Q |
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| T |
10811721 |
tcacctcaatattgtggctgtttgtgtttagcaaattgcacaactc-aataaattgaggtgttcaacaatgtgtacaaagggaaatttccattttatatg |
10811623 |
T |
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| Q |
672 |
ttctaccactatgaaaacttggacatctaaactggtatattt |
713 |
Q |
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| T |
10811622 |
ttctaccactatgaaaacttggacatctaaattggtatattt |
10811581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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