View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2129_low_10 (Length: 283)
Name: NF2129_low_10
Description: NF2129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2129_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 10 - 266
Target Start/End: Original strand, 32592312 - 32592568
Alignment:
| Q |
10 |
agatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
109 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32592312 |
agatgaaaggtgaagttggctcaaaatctagggaaggacaaacactgcagaatgcagcaaaaattaacgcggagacgaaaattattgctatgcagagggc |
32592411 |
T |
|
| Q |
110 |
tggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctgaggctaattctgagttggcg |
209 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32592412 |
tggagagagtgacaaggagggatttagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctgagtctaattctgagttggcg |
32592511 |
T |
|
| Q |
210 |
aagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaa |
266 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
32592512 |
aagaagaaagcggcttggactaaggcggctcaagtggctgaagtcgaagctgctaaa |
32592568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 10 - 199
Target Start/End: Complemental strand, 31527619 - 31527430
Alignment:
| Q |
10 |
agatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
109 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31527619 |
agatgaaaggtgaagttggctcaaaatctagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
31527520 |
T |
|
| Q |
110 |
tggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctgaggctaattc |
199 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31527519 |
tggagagagtgacaaggagggatttagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctgaggctaattc |
31527430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 8 - 267
Target Start/End: Complemental strand, 51825024 - 51824774
Alignment:
| Q |
8 |
tgagatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagg |
107 |
Q |
| |
|
||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |
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|
| T |
51825024 |
tgagatgaaaggtgaagttggttcgaaatctagggaaggacaaacactgcagaatgcagcaaaaattgacgcagagacgaaagttattgcgatgcagagg |
51824925 |
T |
|
| Q |
108 |
gctggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctgaggctaattctgagttgg |
207 |
Q |
| |
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|||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
51824924 |
gctggagagagtaacaaggagggatttagagttaggactgaagtgaaggtttttgagaatcaaagagagg---------ctgaggctaactctgagttgg |
51824834 |
T |
|
| Q |
208 |
cgaagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaat |
267 |
Q |
| |
|
||| ||||||||| |||||||||||||| |||||||||||| |||| ||||||||||||| |
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|
| T |
51824833 |
cgatgaagaaagcggcttggactaaggctgctcaagtggctcaagttgaggctgctaaat |
51824774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 37031012 - 37030763
Alignment:
| Q |
10 |
agatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
109 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||||||||| |||||||||||||| |||||||| || |||||||| ||||||| |||||||| || |
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|
| T |
37031012 |
agatgaaaggtgaaattggttcaaaattgagggaaggacaaacgctgcagaatgcagcgaaaattgatgcagagacgaaggttattgcaatgcagagagc |
37030913 |
T |
|
| Q |
110 |
tggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctgaggctaattctgagttggcg |
209 |
Q |
| |
|
||||||| |||| ||||||||| | | ||| |||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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|
| T |
37030912 |
tggagagggtgagaaggagggaattaaagtgaggactgaagtgaaagtttttgagaatcaaagagaggctgaagtggctcaagctaattctgagttggct |
37030813 |
T |
|
| Q |
210 |
aagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggc |
259 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
37030812 |
aagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggc |
37030763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 158; Significance: 4e-84; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 49188501 - 49188252
Alignment:
| Q |
10 |
agatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
109 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||| ||||||| |||||||| || |
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|
| T |
49188501 |
agatgaaaggtgaaattggttcaaaattgagggaaggacaaacgctgcagaatgcagcaaaaattgatgcagagacgaaggttattgcgatgcagagagc |
49188402 |
T |
|
| Q |
110 |
tggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctgaggctaattctgagttggcg |
209 |
Q |
| |
|
||||||| |||| ||||||||| | | ||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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|
| T |
49188401 |
tggagagggtgagaaggagggaattaaagtgaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctcaagctaattctgagttggct |
49188302 |
T |
|
| Q |
210 |
aagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggc |
259 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
49188301 |
aagaagaaagcggcttggaccaaggcggctcaggtggctgaagtcgaggc |
49188252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 10 - 262
Target Start/End: Complemental strand, 49192237 - 49191985
Alignment:
| Q |
10 |
agatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
109 |
Q |
| |
|
||||||||||||| |||| || |||| ||||||||||||||||| || ||||||||||||||||| || ||||| || |||||||| ||||||||||| |
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|
| T |
49192237 |
agatgaaaggtgagattggttcgaaattgagggaaggacaaacactacaaaatgcagcaaaaattgatgcagagacaaagattattgcgatgcagagggc |
49192138 |
T |
|
| Q |
110 |
tggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctgaggctaattctgagttggcg |
209 |
Q |
| |
|
||||||| | |||||||||||| | | ||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
49192137 |
tggagagggcgacaaggagggaattaaagtgaggactgaagtgaaggtttttgagaatcagagagaagctgaagtggctgaggctaattctgaattggct |
49192038 |
T |
|
| Q |
210 |
aagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgc |
262 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
49192037 |
aagaagaaagcggcttggactaaggcggctcaagtggccgaagttgaggctgc |
49191985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 10 - 266
Target Start/End: Complemental strand, 49208514 - 49208258
Alignment:
| Q |
10 |
agatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
109 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||||||||| | ||||| ||||| |||||||| || |||||||| ||||||| ||||||||||| |
|
|
| T |
49208514 |
agatgaaaggtgaaattggttcaaaattgagggaaggacaaacgatccagaacgcagcgaaaattgatgcagagacgaaggttattgcgatgcagagggc |
49208415 |
T |
|
| Q |
110 |
tggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctgaggctaattctgagttggcg |
209 |
Q |
| |
|
|||||| |||| || ||||| | | ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
49208414 |
tggagaaggtgagaaacagggaattaaagtgaggactgaagtgaaagtttttgagaatcaaagagaggctgaagtggctgaggctaattccgagttggct |
49208315 |
T |
|
| Q |
210 |
aagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaa |
266 |
Q |
| |
|
||||||||||| |||||||| | |||||||||||||||||| | |||||||||||| |
|
|
| T |
49208314 |
aagaagaaagctgcttggacaatggcggctcaagtggctgagcttgaggctgctaaa |
49208258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 43 - 259
Target Start/End: Complemental strand, 49203310 - 49203094
Alignment:
| Q |
43 |
aaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggctggagagagtgacaaggagggattaagagttag |
142 |
Q |
| |
|
||||| |||| |||||||||||||| || ||||| || ||||| ||| ||||||| |||||||| | ||| || |||||||||||||| | | ||| || |
|
|
| T |
49203310 |
aaggaaaaacgctgcagaatgcagcgaagattgatgcagagacaaaagttattgcactgcagaggaccggatagggtgacaaggagggaattaaagtgag |
49203211 |
T |
|
| Q |
143 |
gactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctgaggctaattctgagttggcgaagaagaaagcagcttggactaaggcggctcaa |
242 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
49203210 |
gactgaagtgaaggtttttgagaatcagagagaggctgaggtggctgaggctaattctgagttggctaagaagaaggcagcttggactaaggcggctcag |
49203111 |
T |
|
| Q |
243 |
gtggctgaagtcgaggc |
259 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
49203110 |
gtggctgaagttgaggc |
49203094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 10 - 259
Target Start/End: Complemental strand, 49213354 - 49213105
Alignment:
| Q |
10 |
agatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
109 |
Q |
| |
|
|||||||||||||| |||| || |||| |||| ||||||||| ||||||||||||||||||||||| || |||||||| |||| || ||||| ||||| |
|
|
| T |
49213354 |
agatgaaaggtgaaattggttcgaaattgagggtaggacaaacgctgcagaatgcagcaaaaattgatgcagagacgaaggttatagcgatgcaaagggc |
49213255 |
T |
|
| Q |
110 |
tggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctgaggctaattctgagttggcg |
209 |
Q |
| |
|
||||| ||||| ||| ||||| | | ||| || ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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|
| T |
49213254 |
aggagaaagtgagaagcagggaattaaagtgagaactgaagtgaaagtatttgagaatcagagagaggctgaagtggctgaggctaattcggagttggcc |
49213155 |
T |
|
| Q |
210 |
aagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggc |
259 |
Q |
| |
|
|| ||||| || |||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
49213154 |
aaaaagaaggctgcttggaccaaggcggctcaggtggctgaagttgaggc |
49213105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 10 - 266
Target Start/End: Complemental strand, 26756880 - 26756624
Alignment:
| Q |
10 |
agatgaaaggtgaagttggctcaaaatatagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
109 |
Q |
| |
|
||||||||||||||||||| || |||| ||| |||||||||| |||||||||||||| |||||||| || ||||||||| | ||||| | ||||||||| |
|
|
| T |
26756880 |
agatgaaaggtgaagttggatcgaaatcgaggaaaggacaaacgctgcagaatgcagcgaaaattgatgcagagacgaaagtcattgcgacgcagagggc |
26756781 |
T |
|
| Q |
110 |
tggagagagtgacaaggagggattaagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctgaggctaattctgagttggcg |
209 |
Q |
| |
|
||||||| ||| ||||| | | | | ||||||||||||||||||||||||||||||| | ||||||||||| ||||| ||||||||||| |||||| | |
|
|
| T |
26756780 |
tggagaggctgagaaggaagaaattaaagttaggactgaagtgaaggtttttgagaataagagagaggctgaggtggccgaggctaattccgagttgact |
26756681 |
T |
|
| Q |
210 |
aagaagaaagcagcttggactaaggcggctcaagtggctgaagtcgaggctgctaaa |
266 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
26756680 |
aagaagaaagcggcttggactaaggcggctcaagtcgctgaagttgaggctgctaaa |
26756624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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