View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2129_low_15 (Length: 237)
Name: NF2129_low_15
Description: NF2129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2129_low_15 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 1140448 - 1140659
Alignment:
| Q |
22 |
gaaggagtctattatacattatattttatcttttttgttttgttgaagtcctatnnnnnnnnnnnnnnnnnnctcttactagtttttgtctttctttt-a |
120 |
Q |
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| T |
1140448 |
gaaggagtctattatacattatattttatcttttttgttttgttgaagtcctataaaaaaaaaaaaa-----ctcttactagtttttgtctttcttttta |
1140542 |
T |
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| Q |
121 |
agtctcagtatttcattttagtccttataagtttagttcctagtttatgttctcctttataaagtgacgtaaatgtcaagttatttcgagtgattaagaa |
220 |
Q |
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| T |
1140543 |
agtctcagtatttcattttagtccttataagtttagttcctagtttatgttctcctttataaagtgacgtaaatgtcaagttatttcgagtgattaagaa |
1140642 |
T |
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| Q |
221 |
ctataagaatttttcac |
237 |
Q |
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|||||||| |||||||| |
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| T |
1140643 |
ctataagattttttcac |
1140659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 123 - 237
Target Start/End: Original strand, 1137084 - 1137198
Alignment:
| Q |
123 |
tctcagtatttcattttagtccttataagtttagttcctagtttatgttctcctttataaagtgacgtaaatgtcaagttatttcgagtgattaagaact |
222 |
Q |
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||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||| | ||| |||||||| ||||| |
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| T |
1137084 |
tctcagtatttcattttagaccttatagttttagttcctagtttaagttctcctttacaaagtgacgtaaatgtcaaaaaaattcaagtgattatgaact |
1137183 |
T |
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| Q |
223 |
ataagaatttttcac |
237 |
Q |
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| T |
1137184 |
ataagaatttttcac |
1137198 |
T |
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