View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2129_low_17 (Length: 226)
Name: NF2129_low_17
Description: NF2129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2129_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 9e-60; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 46 - 209
Target Start/End: Complemental strand, 20072124 - 20071963
Alignment:
| Q |
46 |
taatcaattagttgttacgcaactaattgttagttcctctacttgtctaccctataccacacatctatcactatatcttcttcttcaatagaaaattgca |
145 |
Q |
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| T |
20072124 |
taatcaattagttgttatgcaactaattgtttattgcgctacttgtctaccctaca--acacatctaccactatatcttcttcttcaatcgaaaattgca |
20072027 |
T |
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| Q |
146 |
gtagttcatttacttatgttcaacagccactctacgactctttgattttcccccctttactact |
209 |
Q |
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| T |
20072026 |
gtagttcatttacttatgttcaacagccactctacgactctttgatttttccccctttactact |
20071963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 46 - 209
Target Start/End: Complemental strand, 20086125 - 20085965
Alignment:
| Q |
46 |
taatcaattagttgttacgcaactaattgttagttcctctacttgtctaccctataccacacatctatcactatatcttcttcttcaatagaaaattgca |
145 |
Q |
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| T |
20086125 |
taatcaattagtttttatgcaactaattgtttattgcgctacttgtctaccctaca--acacatctaccactatatcttcttcttcaatcgaaaattgca |
20086028 |
T |
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| Q |
146 |
gtagttcatttacttatgttcaacagccactctacgactctttgattttcccccctttactact |
209 |
Q |
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| T |
20086027 |
gtagttcatttacttatgttcaacagccactctacgactctttgattttc-cccctttactact |
20085965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 209
Target Start/End: Complemental strand, 20069677 - 20069523
Alignment:
| Q |
52 |
attagttgttacgcaactaattgttagttcctctacttgtctaccctataccacacatctatcactatatcttcttcttcaatagaaaattgcagtagtt |
151 |
Q |
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|||| |||||| |||| |||||||| || ||||| || |||||||| || | ||||||| ||||||||||||||||||||| |||||||||| ||||| |
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| T |
20069677 |
attacttgttatgcaagtaattgtttatttctctagttatctacccttta--atacatctaccactatatcttcttcttcaatcgaaaattgcattagtt |
20069580 |
T |
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| Q |
152 |
catttacttatgttcaacagccactctacgactctttgattttcccccctttactact |
209 |
Q |
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|||||| || ||||||| ||||||||||| ||| ||||||||| | |||||||||||| |
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| T |
20069579 |
catttatttctgttcaaaagccactctacaactgtttgatttt-ctccctttactact |
20069523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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