View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2129_low_2 (Length: 644)
Name: NF2129_low_2
Description: NF2129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2129_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 571; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 571; E-Value: 0
Query Start/End: Original strand, 19 - 638
Target Start/End: Original strand, 36540043 - 36540662
Alignment:
| Q |
19 |
atttgctccacataacataaaccactaacataatcataatcctagatattttacttcctttcattgcaaccattttagaaagttcttaggcatatcttag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36540043 |
atttgctccacataacataaaccactaacataatcataatcctagatattttacttcctttcattgcaaccattttagaaagttcttaggcatatcttag |
36540142 |
T |
|
| Q |
119 |
aatcagaaccgccgatacacttcaaccgacggtctataaactcatcatcgtcagctatgtcttccgagttttcgactacttcatcagtttgtagtacaga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36540143 |
aatcagaaccgccgatacacttcaaccgacggtctataaactcatcatcgtcagctatgtcttccgagttttcgactacttcatcagtttgtagtacgga |
36540242 |
T |
|
| Q |
219 |
cttatcatgtgtgtcttctgaggctgaggaagagacaagtgctatggttctcctaggttgtcttcaatgtcacatgtatgttttgttatccgaggctgat |
318 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36540243 |
cttatcatgtgtgtcttctgaggctgaagaagagacaagtgctatggttctcctaggttgtcttcaatgtcacatgtatgttttgttatccgaggctgat |
36540342 |
T |
|
| Q |
319 |
cccaatccaaaatgtcctaagtgtaagagtactgtcttgcttgatttccttaacaacaaacaaaataccagaaaaacaagcagctagcaagatgatgatg |
418 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36540343 |
cccaatccaaaatgccctaagtgtaagagtactgtcttgcttgatttccttaacaacaaacaaaataccagaaaaacaagcagctagcaagatgatgatg |
36540442 |
T |
|
| Q |
419 |
cacaccatgtataaataattagaaagatacaaattaacatgtatttgtgctattctatttcatgttgctatttaattaattattatatatagattgtttt |
518 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36540443 |
cacaccatgtataaataatcagaaagatacaaattaacatgtatttgtgctattctatttcatgttgctatttaattaattattatatatagattgtttt |
36540542 |
T |
|
| Q |
519 |
nnnnnnnttaattatatatagatagttgattacattttcctcttgaatttgcttttcgtcagatttcaatgtttggaatacaaaggtaaagataaccatt |
618 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36540543 |
aaaaaaattaattatatatagatggttgattacattttcctcttgaatttgcttttcgttagatttcaatgtttggaatacaaaggtaaagataaccatt |
36540642 |
T |
|
| Q |
619 |
taaatttcatttcatctcac |
638 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
36540643 |
taaatttcatttcatttcac |
36540662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 323 - 373
Target Start/End: Complemental strand, 18904119 - 18904069
Alignment:
| Q |
323 |
atccaaaatgtcctaagtgtaagagtactgtcttgcttgatttccttaaca |
373 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||| ||||||||||| ||||||| |
|
|
| T |
18904119 |
atcccaaatgtcccaagtgcaagagtactgtgttgcttgattttcttaaca |
18904069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University