View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2129_low_9 (Length: 336)
Name: NF2129_low_9
Description: NF2129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2129_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 318
Target Start/End: Complemental strand, 25869093 - 25868781
Alignment:
| Q |
7 |
gattattcttatgttaatgaaatgcaaaaagcataactttatcaaaggcctaaaaaggggtgggttagttttatgtgactagtcaaagcnnnnnnngtca |
106 |
Q |
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| T |
25869093 |
gattattcttatgttaatgaaatgcaaaaagcataactttatcaaaggcctaaaaaggggtgggttagttttatgtgactagtcaaagcaaaaaaagtca |
25868994 |
T |
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| Q |
107 |
cactaatttcctagattgtcaacagcagtacaacacaaatatactttcatgtagccatctttttcttgttaccattatggttgaaaataacatttactga |
206 |
Q |
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| T |
25868993 |
cactaatttcctagattgtcaacagcagtacaacacaaatatactttcatgtagccatctttttcttgttaccattatggttgaaaataacatttactga |
25868894 |
T |
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| Q |
207 |
cgcatataa-aaaaggtaacaatatgttactgaggttgaagttgatataactgagttttcatttgatatttccaaccacataactttactcacctttcct |
305 |
Q |
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| T |
25868893 |
cgcatataaaaaaaggtgacaatatgttactgaggttgaagttgatataactgaattttcatttgatatttccaaccacataactttactcacctttctt |
25868794 |
T |
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| Q |
306 |
tgtgagaagtctc |
318 |
Q |
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| T |
25868793 |
tgtgagaagtctc |
25868781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 318
Target Start/End: Complemental strand, 25866946 - 25866794
Alignment:
| Q |
166 |
tttttcttgttaccattatggttgaaaataacatttactgacgcatataaaaaaggtaacaatatgttactgaggttgaagttgatataactgagttttc |
265 |
Q |
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| T |
25866946 |
tttttcttgttaccatgatggttgtaaataacatttactga--catatatttcttgttacagcgtgttattgagtttgaagttgctataactaagttctc |
25866849 |
T |
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| Q |
266 |
atttgatatt--tccaaccacataactttactcacctttccttgtgagaagtctc |
318 |
Q |
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| T |
25866848 |
atttgatactcccccaacaaccaaactttactcacctttctgtgtgagaagtctc |
25866794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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