View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21300_high_1 (Length: 654)

Name: NF21300_high_1
Description: NF21300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21300_high_1
NF21300_high_1
[»] chr4 (2 HSPs)
chr4 (11-428)||(22042295-22042712)
chr4 (472-637)||(22042756-22042921)
[»] chr3 (2 HSPs)
chr3 (11-428)||(2424704-2425121)
chr3 (472-637)||(2424498-2424663)


Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 11 - 428
Target Start/End: Original strand, 22042295 - 22042712
Alignment:
Q  11 cgaagaatataagaatatagtggagaatcttatatgggaatactgtcgcgatatttactttggacacaggaaagtggtttatggatcttaaaggaaaaga 110  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22042295 cgaagaaaataagaatatagtggagaatcttatatgggaatactatcgcgatatttactttggacacaggaaagtggtt-atggatcttaaaggaaaaga 22042393  T
Q  111 agatgagttgcttacaaattttgaataaaccgcggaatctgcttttctcatggttgtagtatttgcactatctgtaacaaagcacaaattgagttccaca 210  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22042394 agatgagttgcttacaaattttgaaaaaaccgcggaatctgcttttctcatggttgtagtatttgcactatctgtaacaaagcacaaattgagttccaca 22042493  T
Q  211 tttgctcaagaaatacaaaccgaaatctcattgaagatactagtatcattatcttgtgtggaatattttcgccatgtgcgcttgccagagtatatggaaa 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22042494 tttgctcaagaaatacaaaccgaaatctcattgaagatactagtatcattatcttgtgtggaatattttcgccatgtgcgcttgccagagtatatggaaa 22042593  T
Q  311 ccattcgcaaggtaattgcaattgtt-agaagaatgagaattcttgtacattttttgtgaactccataccgtcttatggtgacttgacaaatgggccagg 409  Q
    ||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22042594 ccattcgcaaggtaactgcaattgttaagaagaatgagaatgcttgtacattttttgtgaactccataccgtcttatggtgacttgacaaatgggccagg 22042693  T
Q  410 tatgatttattcaattgca 428  Q
    |||||||||||||||||||    
T  22042694 tatgatttattcaattgca 22042712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 472 - 637
Target Start/End: Original strand, 22042756 - 22042921
Alignment:
Q  472 ataagattctatattcttctagaccagaaaacgaaatacttttggtccaaggatgatgtacaaacagcccgtgttttgttttacctacgagtcattccaa 571  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  22042756 ataagattctatgttcttctagaccagaaaacgaaatacttttggtccaaggatgaagtacaaacagcccgtgttttgctttacctacgagtcattccaa 22042855  T
Q  572 ctttgattgagtgtttgcccggccctgtattcggagacatggtaggtccaactatgttcttctatc 637  Q
    |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||    
T  22042856 ctttgattgagtgtttgcgcggccctgtattcggagacatggtagctccaactatgttcttgtatc 22042921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 11 - 428
Target Start/End: Complemental strand, 2425121 - 2424704
Alignment:
Q  11 cgaagaatataagaatatagtggagaatcttatatgggaatactgtcgcgatatttactttggacacaggaaagtggtttatggatcttaaaggaaaaga 110  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | | ||||||||||||||||    
T  2425121 cgaagaaaataagaatatagtggagaatcttatatgggaatactgtcgcgatatttactttggacacaggaaagtggct-acgcatcttaaaggaaaaga 2425023  T
Q  111 agatgagttgcttacaaattttgaataaaccgcggaatctgcttttctcatggttgtagtatttgcactatctgtaacaaagcacaaattgagttccaca 210  Q
    ||||| |||||||||  |||| ||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  2425022 agatgtgttgcttacggatttcgaaaaaatcgcggaatctgcttttctcatggttgtagtatttgcactagctgtaacaaagcacaaattgagttccaaa 2424923  T
Q  211 tttgctcaagaaatacaaaccgaaatctcattgaagatactagtatcattatcttgtgtggaatattttcgccatgtgcgcttgccagagtatatggaaa 310  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2424922 tttgctcaagaaatacaaaccgaagtctcattgaagatactagtatcattatcttgtgtggaatattttcgccatgttcgcttgccagagtatatggaaa 2424823  T
Q  311 ccattcgcaaggtaattgcaattgtt-agaagaatgagaattcttgtacattttttgtgaactccataccgtcttatggtgacttgacaaatgggccagg 409  Q
    ||||||||||||||||||||| |||| | |||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2424822 ccattcgcaaggtaattgcaagtgttaacaagaatgagaatgcttgtaccttttttgtgaactccataccgtcttatggcgacttgacaaatgggccagg 2424723  T
Q  410 tatgatttattcaattgca 428  Q
    |||||||||||||||||||    
T  2424722 tatgatttattcaattgca 2424704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 472 - 637
Target Start/End: Complemental strand, 2424663 - 2424498
Alignment:
Q  472 ataagattctatattcttctagaccagaaaacgaaatacttttggtccaaggatgatgtacaaacagcccgtgttttgttttacctacgagtcattccaa 571  Q
    |||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  2424663 ataagattatatgttcttctagaccagaaaaccaaatacttttggtccaaggatgaagtgcaaacagcccgtgttttgttttacctacgagtcattccaa 2424564  T
Q  572 ctttgattgagtgtttgcccggccctgtattcggagacatggtaggtccaactatgttcttctatc 637  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||    
T  2424563 ctttgattgagtgtttgcccggccctgtatttggagacatggtagctccaactatgttcttgtatc 2424498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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