View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21300_high_5 (Length: 234)

Name: NF21300_high_5
Description: NF21300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21300_high_5
NF21300_high_5
[»] chr5 (17 HSPs)
chr5 (1-216)||(41125500-41125715)
chr5 (1-48)||(28970153-28970200)
chr5 (1-45)||(2577490-2577534)
chr5 (10-48)||(3520586-3520624)
chr5 (3-45)||(11163346-11163388)
chr5 (1-45)||(17868114-17868158)
chr5 (1-44)||(12467400-12467443)
chr5 (1-47)||(15413957-15414003)
chr5 (3-37)||(39154817-39154851)
chr5 (10-47)||(1372077-1372114)
chr5 (12-45)||(2878586-2878619)
chr5 (1-45)||(7111058-7111102)
chr5 (1-45)||(13739361-13739405)
chr5 (13-45)||(28357271-28357303)
chr5 (13-45)||(28625461-28625493)
chr5 (1-49)||(42558623-42558671)
chr5 (13-45)||(42706777-42706809)
[»] chr4 (22 HSPs)
chr4 (1-48)||(42611943-42611990)
chr4 (1-45)||(34633366-34633410)
chr4 (1-49)||(29877602-29877650)
chr4 (1-49)||(8130451-8130499)
chr4 (1-49)||(23297401-23297449)
chr4 (4-52)||(43699561-43699609)
chr4 (1-44)||(1374438-1374481)
chr4 (1-46)||(36741036-36741081)
chr4 (4-44)||(35405653-35405693)
chr4 (1-44)||(35124355-35124398)
chr4 (1-47)||(2702790-2702836)
chr4 (3-45)||(9153659-9153701)
chr4 (3-45)||(12022988-12023030)
chr4 (12-45)||(27368061-27368094)
chr4 (1-42)||(40699326-40699367)
chr4 (13-49)||(42697289-42697326)
chr4 (13-49)||(825659-825695)
chr4 (13-45)||(825812-825844)
chr4 (13-45)||(7148753-7148785)
chr4 (17-49)||(23335790-23335822)
chr4 (13-49)||(52274193-52274229)
chr4 (13-45)||(54412120-54412152)
[»] chr2 (15 HSPs)
chr2 (1-49)||(33321478-33321526)
chr2 (3-49)||(13097879-13097925)
chr2 (1-47)||(2790146-2790192)
chr2 (1-51)||(38215984-38216034)
chr2 (1-45)||(29774712-29774756)
chr2 (5-48)||(12442789-12442832)
chr2 (1-44)||(37420038-37420081)
chr2 (1-39)||(4090462-4090500)
chr2 (1-47)||(7480977-7481023)
chr2 (1-46)||(38471866-38471911)
chr2 (1-45)||(446419-446463)
chr2 (1-45)||(887544-887588)
chr2 (1-45)||(8832589-8832633)
chr2 (13-45)||(12223980-12224012)
chr2 (1-49)||(36501421-36501469)
[»] chr3 (15 HSPs)
chr3 (2-44)||(53218116-53218158)
chr3 (4-49)||(29270324-29270369)
chr3 (1-45)||(10272089-10272133)
chr3 (5-49)||(34707792-34707836)
chr3 (1-48)||(10448738-10448785)
chr3 (13-47)||(29270480-29270514)
chr3 (13-49)||(52021223-52021259)
chr3 (1-47)||(21296731-21296777)
chr3 (12-49)||(20685928-20685965)
chr3 (1-45)||(4974278-4974322)
chr3 (1-45)||(5129952-5129996)
chr3 (1-49)||(22809269-22809317)
chr3 (1-49)||(35480308-35480355)
chr3 (17-45)||(45331372-45331400)
chr3 (13-45)||(48597940-48597972)
[»] chr7 (14 HSPs)
chr7 (4-49)||(40629494-40629539)
chr7 (5-46)||(18765020-18765061)
chr7 (1-46)||(38372524-38372569)
chr7 (1-45)||(18837189-18837233)
chr7 (1-45)||(29390625-29390669)
chr7 (1-45)||(33204966-33205010)
chr7 (1-45)||(34922898-34922942)
chr7 (1-45)||(35331109-35331153)
chr7 (1-47)||(22032727-22032773)
chr7 (13-47)||(47511022-47511056)
chr7 (12-49)||(40629339-40629376)
chr7 (1-45)||(16958783-16958827)
chr7 (5-45)||(30181517-30181557)
chr7 (13-49)||(35713560-35713596)
[»] chr8 (9 HSPs)
chr8 (1-45)||(13131397-13131441)
chr8 (3-48)||(14942388-14942433)
chr8 (1-44)||(32131408-32131451)
chr8 (1-45)||(2019724-2019768)
chr8 (13-45)||(18396917-18396949)
chr8 (1-29)||(19327850-19327878)
chr8 (1-45)||(28879187-28879231)
chr8 (1-45)||(32212925-32212969)
chr8 (13-49)||(35286058-35286094)
[»] chr6 (12 HSPs)
chr6 (1-49)||(7267914-7267962)
chr6 (13-49)||(10755353-10755389)
chr6 (1-49)||(35071334-35071382)
chr6 (1-47)||(3211076-3211122)
chr6 (1-47)||(21871358-21871404)
chr6 (1-45)||(35111410-35111454)
chr6 (3-46)||(9202308-9202351)
chr6 (1-46)||(6632625-6632670)
chr6 (13-49)||(6805726-6805762)
chr6 (13-49)||(10874114-10874150)
chr6 (13-45)||(21025300-21025332)
chr6 (13-45)||(25430690-25430722)
[»] chr1 (12 HSPs)
chr1 (1-43)||(35590099-35590141)
chr1 (1-45)||(391135-391179)
chr1 (1-45)||(48819431-48819475)
chr1 (4-47)||(1265771-1265814)
chr1 (1-44)||(28689970-28690013)
chr1 (13-43)||(26936842-26936872)
chr1 (1-47)||(47413504-47413550)
chr1 (12-45)||(4068082-4068115)
chr1 (1-46)||(49971217-49971262)
chr1 (1-49)||(6900643-6900691)
chr1 (1-45)||(28870335-28870379)
chr1 (1-45)||(35897698-35897742)


Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 41125715 - 41125500
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaacaggcactctcgtggataaaactgtttttacacagtcggtcaatcatcaccattat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  41125715 tgcataagttgttttgcataagctcaaaaataagccaatccaaacaggcactctcgtggataaaactgtttttactcagtcagtcaatcatcaccattat 41125616  T
Q  101 gattagataattgaaaatgtttggctttacctataactgcttttaaagtcaaacacatcagcggttttgatttgtcgacagtgtatgaaaattaatctct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41125615 gattagataattgaaaatgtttggctttacctataactgcttttaaagtcaaacaaatcagcggttttgatttgtcgacagtgtatgaaaattaatctct 41125516  T
Q  201 gaaaagcatgtctggt 216  Q
    ||||||||||||||||    
T  41125515 gaaaagcatgtctggt 41125500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 28970153 - 28970200
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaacagg 48  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  28970153 tgcataagttgttttgcataagctcaaaaataagccaatccaaacagg 28970200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 2577490 - 2577534
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||    
T  2577490 tgcataagctgttttggataagctaaaaaataagccaatccaaac 2577534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 3520586 - 3520624
Alignment:
Q  10 tgttttgcataagctaaaaaataagccaatccaaacagg 48  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  3520586 tgttttgcataagctaaaaaataagtcaatccaaacagg 3520624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 11163346 - 11163388
Alignment:
Q  3 cataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||| ||||||||||||||||||||||||| ||||||||||    
T  11163346 cataagctgttttgcataagctaaaaaataagtcaatccaaac 11163388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17868158 - 17868114
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||||| | |||| |||||||||||||||||||||||||||||    
T  17868158 tgcataagctattttccataagctaaaaaataagccaatccaaac 17868114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 12467400 - 12467443
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaa 44  Q
    |||||||||| |||| ||||| ||||||||||||||||||||||    
T  12467400 tgcataagttatttttcataacctaaaaaataagccaatccaaa 12467443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 15414003 - 15413957
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaacag 47  Q
    |||||||| |||||||||||||||  |||||||| ||||||||||||    
T  15414003 tgcataagctgttttgcataagctctaaaataagtcaatccaaacag 15413957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 39154817 - 39154851
Alignment:
Q  3 cataagttgttttgcataagctaaaaaataagcca 37  Q
    |||| ||||||||||||||||||||||||||||||    
T  39154817 cataggttgttttgcataagctaaaaaataagcca 39154851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 47
Target Start/End: Original strand, 1372077 - 1372114
Alignment:
Q  10 tgttttgcataagctaaaaaataagccaatccaaacag 47  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  1372077 tgttttgcataagctcaaaaataagtcaatccaaacag 1372114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 2878619 - 2878586
Alignment:
Q  12 ttttgcataagctaaaaaataagccaatccaaac 45  Q
    |||| |||||||||||||||||||||||||||||    
T  2878619 tttttcataagctaaaaaataagccaatccaaac 2878586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 7111058 - 7111102
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||| ||| |||||||| ||||||||||||| |||||||||||    
T  7111058 tgcataggttattttgcatgagctaaaaaataaaccaatccaaac 7111102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 13739361 - 13739405
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||||||| |||| ||||| || ||||||||||||||||||||    
T  13739361 tgcataagttatttttcataaactcaaaaataagccaatccaaac 13739405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 28357271 - 28357303
Alignment:
Q  13 tttgcataagctaaaaaataagccaatccaaac 45  Q
    ||||||||||||||||||||||||||| |||||    
T  28357271 tttgcataagctaaaaaataagccaatacaaac 28357303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 28625493 - 28625461
Alignment:
Q  13 tttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||||||||||||||||||| ||||||||||    
T  28625493 tttgcataagctaaaaaataagtcaatccaaac 28625461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 42558671 - 42558623
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaacaggc 49  Q
    |||||||| | |||| |||||||| |||||||||||||| |||||||||    
T  42558671 tgcataagctatttttcataagctcaaaaataagccaattcaaacaggc 42558623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 42706809 - 42706777
Alignment:
Q  13 tttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||||||||| ||||||||||||||||||||    
T  42706809 tttgcataagctcaaaaataagccaatccaaac 42706777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 42611943 - 42611990
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaacagg 48  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  42611943 tgcataagttgttttgcataagctaaaaaataagccaatccaaacagg 42611990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34633410 - 34633366
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  34633410 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 34633366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29877650 - 29877602
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaacaggc 49  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  29877650 tgcataaattgttttgcataagctcaaaaataagccaatccaaacaggc 29877602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 8130499 - 8130451
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaacaggc 49  Q
    |||||||| ||||||||||| |||||||||||||||||||||| |||||    
T  8130499 tgcataagctgttttgcatatgctaaaaaataagccaatccaaccaggc 8130451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 23297449 - 23297401
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaacaggc 49  Q
    |||||||| | ||||||||||||| ||||||||||||||||||||||||    
T  23297449 tgcataagctattttgcataagctcaaaaataagccaatccaaacaggc 23297401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 43699561 - 43699609
Alignment:
Q  4 ataagttgttttgcataagctaaaaaataagccaatccaaacaggcact 52  Q
    |||||||||||| |||||||| |||||||||||||||||||| ||||||    
T  43699561 ataagttgtttttcataagctcaaaaataagccaatccaaacgggcact 43699609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 1374438 - 1374481
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaa 44  Q
    |||||||||| ||||||||||||| |||||||||||||||||||    
T  1374438 tgcataagtttttttgcataagctcaaaaataagccaatccaaa 1374481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 36741036 - 36741081
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaaca 46  Q
    |||||||| | |||| ||||||||||||||||||||||||||||||    
T  36741036 tgcataagctatttttcataagctaaaaaataagccaatccaaaca 36741081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 35405693 - 35405653
Alignment:
Q  4 ataagttgttttgcataagctaaaaaataagccaatccaaa 44  Q
    ||||||||||||||||||||| ||||||||| |||||||||    
T  35405693 ataagttgttttgcataagctcaaaaataagtcaatccaaa 35405653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 35124398 - 35124355
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaa 44  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||    
T  35124398 tgcataagctgttttgcataagctcaaaaataagtcaatccaaa 35124355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2702790 - 2702836
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaacag 47  Q
    |||||||| || ||||||||||||  |||||||||||||||||||||    
T  2702790 tgcataagctgctttgcataagctctaaaataagccaatccaaacag 2702836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 9153659 - 9153701
Alignment:
Q  3 cataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    ||||||||||||||||||||||  |||||||| ||||||||||    
T  9153659 cataagttgttttgcataagctctaaaataagtcaatccaaac 9153701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 12023030 - 12022988
Alignment:
Q  3 cataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    ||||||||||||||||||||||  |||||||| ||||||||||    
T  12023030 cataagttgttttgcataagctctaaaataagtcaatccaaac 12022988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 27368094 - 27368061
Alignment:
Q  12 ttttgcataagctaaaaaataagccaatccaaac 45  Q
    |||| |||||||||||||||||||||||||||||    
T  27368094 tttttcataagctaaaaaataagccaatccaaac 27368061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40699367 - 40699326
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatcca 42  Q
    |||||||| ||||||||||||||| || ||||||||||||||    
T  40699367 tgcataagctgttttgcataagctcaataataagccaatcca 40699326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 42697326 - 42697289
Alignment:
Q  13 tttgcataagctaaaaaa-taagccaatccaaacaggc 49  Q
    |||||||||||||||||| |||||||||||||||||||    
T  42697326 tttgcataagctaaaaaaataagccaatccaaacaggc 42697289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 825695 - 825659
Alignment:
Q  13 tttgcataagctaaaaaataagccaatccaaacaggc 49  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  825695 tttgcataagctcaaaaagaagccaatccaaacaggc 825659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 825812 - 825844
Alignment:
Q  13 tttgcataagctaaaaaataagccaatccaaac 45  Q
    ||||||||||||||||||| |||||||||||||    
T  825812 tttgcataagctaaaaaattagccaatccaaac 825844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 7148785 - 7148753
Alignment:
Q  13 tttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||||||||| ||||||||||||||||||||    
T  7148785 tttgcataagctcaaaaataagccaatccaaac 7148753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 23335790 - 23335822
Alignment:
Q  17 cataagctaaaaaataagccaatccaaacaggc 49  Q
    |||||||||||||||||| ||||||||||||||    
T  23335790 cataagctaaaaaataaggcaatccaaacaggc 23335822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 52274193 - 52274229
Alignment:
Q  13 tttgcataagctaaaaaataagccaatccaaacaggc 49  Q
    |||||||||||| |||||||||||||| |||||||||    
T  52274193 tttgcataagctcaaaaataagccaattcaaacaggc 52274229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 54412120 - 54412152
Alignment:
Q  13 tttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||||||| ||||||||||||||||||||||    
T  54412120 tttgcataagttaaaaaataagccaatccaaac 54412152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 33321478 - 33321526
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaacaggc 49  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  33321478 tgcataagttgttttgcataagctaaaaaataagtcaatcgaaacaggc 33321526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 13097925 - 13097879
Alignment:
Q  3 cataagttgttttgcataagctaaaaaataagccaatccaaacaggc 49  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||    
T  13097925 cataagctgttttgcataagctcaaaaataagccaatccaaacaggc 13097879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 2790146 - 2790192
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaacag 47  Q
    |||||||| ||||||||||||||| ||||||||||||| ||||||||    
T  2790146 tgcataagctgttttgcataagctcaaaaataagccaacccaaacag 2790192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 38216034 - 38215984
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaacaggcac 51  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||| |||||    
T  38216034 tgcataagctgttttgcataagctcaaaaataagtcaatccaaacgggcac 38215984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 29774756 - 29774712
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    ||||||||||||| |||||||||||||||||||| ||| ||||||    
T  29774756 tgcataagttgttatgcataagctaaaaaataagacaacccaaac 29774712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 48
Target Start/End: Complemental strand, 12442832 - 12442789
Alignment:
Q  5 taagttgttttgcataagctaaaaaataagccaatccaaacagg 48  Q
    ||||||||| |||||||||||||||||| | |||||||||||||    
T  12442832 taagttgttatgcataagctaaaaaatacgtcaatccaaacagg 12442789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 37420038 - 37420081
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaa 44  Q
    ||||||| || |||| ||||||||||||||||||||||||||||    
T  37420038 tgcataaattatttttcataagctaaaaaataagccaatccaaa 37420081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 4090500 - 4090462
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaat 39  Q
    |||||||| ||||||||||||||| ||||||||||||||    
T  4090500 tgcataagctgttttgcataagctcaaaaataagccaat 4090462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7480977 - 7481023
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaacag 47  Q
    |||||||||||||||||||||| | ||||||||| | ||||||||||    
T  7480977 tgcataagttgttttgcataagttcaaaaataagtcgatccaaacag 7481023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 38471866 - 38471911
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaaca 46  Q
    |||||||| |||||||||||||||  ||||||||| ||||||||||    
T  38471866 tgcataagctgttttgcataagctcgaaaataagctaatccaaaca 38471911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 446463 - 446419
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||||||||||||  |||||||| ||||||||| |||||||||    
T  446463 tgcataagttgttttatataagctataaaataagctaatccaaac 446419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 887544 - 887588
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||||| |||||| || |||||||||||| |||||||||||||    
T  887544 tgcataagctgtttttcaaaagctaaaaaattagccaatccaaac 887588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8832589 - 8832633
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||||| | |||| |||||||||||||||||| ||||||||||    
T  8832589 tgcataagctatttttcataagctaaaaaataagtcaatccaaac 8832633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 12223980 - 12224012
Alignment:
Q  13 tttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||||||||| ||||||||||||||||||||    
T  12223980 tttgcataagctcaaaaataagccaatccaaac 12224012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36501469 - 36501421
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaacaggc 49  Q
    |||||||| | |||| || ||||| ||||||||||||||||||||||||    
T  36501469 tgcataagctatttttcacaagctcaaaaataagccaatccaaacaggc 36501421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 53218116 - 53218158
Alignment:
Q  2 gcataagttgttttgcataagctaaaaaataagccaatccaaa 44  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  53218116 gcataagttgttttgcataagctaaaaaataagtcaatccaaa 53218158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 29270369 - 29270324
Alignment:
Q  4 ataagttgttttgcataagctaaaaaataagccaatccaaacaggc 49  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||    
T  29270369 ataagttgttttgcataagctcaaaaataagtcaatccaaacaggc 29270324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10272133 - 10272089
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||    
T  10272133 tgcatgagttgttttgcataagctaaaaaataagtcaatccaaac 10272089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 34707792 - 34707836
Alignment:
Q  5 taagttgttttgcataagctaaaaaataagccaatccaaacaggc 49  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||    
T  34707792 taagttgttttgcataagctcaaaaataagtcaatccaaacaggc 34707836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 10448785 - 10448738
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaacagg 48  Q
    ||||||||||||||||||||||||  ||||||||| ||||||||||||    
T  10448785 tgcataagttgttttgcataagctctaaaataagctaatccaaacagg 10448738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 29270480 - 29270514
Alignment:
Q  13 tttgcataagctaaaaaataagccaatccaaacag 47  Q
    |||||||||||||||||||||||||||||||||||    
T  29270480 tttgcataagctaaaaaataagccaatccaaacag 29270514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 52021259 - 52021223
Alignment:
Q  13 tttgcataagctaaaaaataagccaatccaaacaggc 49  Q
    ||||||||||||||||||| |||||||||||||||||    
T  52021259 tttgcataagctaaaaaatgagccaatccaaacaggc 52021223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 21296777 - 21296731
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaacag 47  Q
    ||||||| ||||||||||||| || ||||||||| ||||||||||||    
T  21296777 tgcataaattgttttgcataatctcaaaaataagtcaatccaaacag 21296731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 20685928 - 20685965
Alignment:
Q  12 ttttgcataagctaaaaaataagccaatccaaacaggc 49  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  20685928 tttttcataagctaaaaaataagtcaatccaaacaggc 20685965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4974322 - 4974278
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||||| || ||||||||||||  |||||||||||||||||||    
T  4974322 tgcataagctgctttgcataagctctaaaataagccaatccaaac 4974278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5129952 - 5129996
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    ||||||| |||||||||||||||| ||||||||| |||| |||||    
T  5129952 tgcataatttgttttgcataagcttaaaaataagtcaattcaaac 5129996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 22809269 - 22809317
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaacaggc 49  Q
    |||||||| |||||||||||| || ||||||||| |||| |||||||||    
T  22809269 tgcataagctgttttgcataacctcaaaaataagtcaattcaaacaggc 22809317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 35480355 - 35480308
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaacaggc 49  Q
    |||||||||| |||| |||||||| ||||||||| ||||||||||||||    
T  35480355 tgcataagttatttt-cataagctcaaaaataagtcaatccaaacaggc 35480308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 45331372 - 45331400
Alignment:
Q  17 cataagctaaaaaataagccaatccaaac 45  Q
    |||||||||||||||||||||||||||||    
T  45331372 cataagctaaaaaataagccaatccaaac 45331400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 48597940 - 48597972
Alignment:
Q  13 tttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||||| ||||||||||||||||||||||||    
T  48597940 tttgcataggctaaaaaataagccaatccaaac 48597972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 40629494 - 40629539
Alignment:
Q  4 ataagttgttttgcataagctaaaaaataagccaatccaaacaggc 49  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||    
T  40629494 ataagctgttttgcataagctcaaaaataagccaatccaaacaggc 40629539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 46
Target Start/End: Complemental strand, 18765061 - 18765020
Alignment:
Q  5 taagttgttttgcataagctaaaaaataagccaatccaaaca 46  Q
    |||||| |||| ||||||||||||||||||||||||||||||    
T  18765061 taagttatttttcataagctaaaaaataagccaatccaaaca 18765020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 38372569 - 38372524
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaaca 46  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||||    
T  38372569 tgcataagctgttttgcataagctcaaaaataagtcaatccaaaca 38372524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18837233 - 18837189
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||| | ||||||||||||||| ||||||||||||||||||||    
T  18837233 tgcatatgctgttttgcataagctcaaaaataagccaatccaaac 18837189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 29390625 - 29390669
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    ||||||||||||||| ||||| || ||||||||||||||||||||    
T  29390625 tgcataagttgttttccataaactcaaaaataagccaatccaaac 29390669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33204966 - 33205010
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||||| | |||| |||||||||||||||||||||||||||||    
T  33204966 tgcataagatatttttcataagctaaaaaataagccaatccaaac 33205010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34922942 - 34922898
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    ||||||||||||||||| | |||| ||||||||||||||||||||    
T  34922942 tgcataagttgttttgcgttagctgaaaaataagccaatccaaac 34922898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 35331153 - 35331109
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||||| |||||||||||||||| |||||||| ||||||||||    
T  35331153 tgcataagctgttttgcataagctacaaaataagtcaatccaaac 35331109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 22032773 - 22032727
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaacag 47  Q
    ||||||||||||||| ||||||||  ||||||||| |||||||||||    
T  22032773 tgcataagttgttttacataagctctaaaataagctaatccaaacag 22032727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 47511056 - 47511022
Alignment:
Q  13 tttgcataagctaaaaaataagccaatccaaacag 47  Q
    |||||||||||| ||||||||||||||||||||||    
T  47511056 tttgcataagctcaaaaataagccaatccaaacag 47511022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 49
Target Start/End: Complemental strand, 40629376 - 40629339
Alignment:
Q  12 ttttgcataagctaaaaaataagccaatccaaacaggc 49  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  40629376 tttttcataagctcaaaaataagccaatccaaacaggc 40629339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16958827 - 16958783
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||||||||||||  ||||||| |||||||||| |||||||||    
T  16958827 tgcataagttgttttatataagctcaaaaataagctaatccaaac 16958783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 30181557 - 30181517
Alignment:
Q  5 taagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||||| ||||||||||| ||||||||| ||||||||||    
T  30181557 taagttgtattgcataagctcaaaaataagtcaatccaaac 30181517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 35713596 - 35713560
Alignment:
Q  13 tttgcataagctaaaaaataagccaatccaaacaggc 49  Q
    |||||||||||| || |||||||||||||||||||||    
T  35713596 tttgcataagcttaagaataagccaatccaaacaggc 35713560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13131441 - 13131397
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||    
T  13131441 tgcataatttgttttgcataagctaaaaaataagcaaatccaaac 13131397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 14942433 - 14942388
Alignment:
Q  3 cataagttgttttgcataagctaaaaaataagccaatccaaacagg 48  Q
    ||||||||||||| ||||||||  ||||||||||||||||||||||    
T  14942433 cataagttgttttacataagctctaaaataagccaatccaaacagg 14942388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 32131451 - 32131408
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaa 44  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||    
T  32131451 tgcataagctgttttgcataagctcaaaaataagtcaatccaaa 32131408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 2019724 - 2019768
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||||| |||||||||||||||  |||||||| ||||||||||    
T  2019724 tgcataagatgttttgcataagctctaaaataagtcaatccaaac 2019768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 18396949 - 18396917
Alignment:
Q  13 tttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||||||||| ||||||||||||||||||||    
T  18396949 tttgcataagctcaaaaataagccaatccaaac 18396917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 19327878 - 19327850
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaa 29  Q
    |||||||||||||||||||||||||||||    
T  19327878 tgcataagttgttttgcataagctaaaaa 19327850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28879187 - 28879231
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||||| | |||| |||||||||||||||||| ||||||||||    
T  28879187 tgcataagctatttttcataagctaaaaaataagtcaatccaaac 28879231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32212969 - 32212925
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||||| | |||| ||||||| |||||||||||||||||||||    
T  32212969 tgcataagctatttttcataagcaaaaaaataagccaatccaaac 32212925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 35286058 - 35286094
Alignment:
Q  13 tttgcataagctaaaaaataagccaatccaaacaggc 49  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  35286058 tttgtataagctaaaaaataagccaatctaaacaggc 35286094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 7267914 - 7267962
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaacaggc 49  Q
    ||||||||||||| | |||||||| ||||||||||||||||||||||||    
T  7267914 tgcataagttgttattcataagcttaaaaataagccaatccaaacaggc 7267962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 10755353 - 10755389
Alignment:
Q  13 tttgcataagctaaaaaataagccaatccaaacaggc 49  Q
    |||||||||||||||||||||||||||||||||||||    
T  10755353 tttgcataagctaaaaaataagccaatccaaacaggc 10755389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 35071382 - 35071334
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaacaggc 49  Q
    |||||||| | |||| |||||||||||||||||||||||||||||||||    
T  35071382 tgcataagctatttttcataagctaaaaaataagccaatccaaacaggc 35071334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 3211076 - 3211122
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaacag 47  Q
    |||||||| ||||||||| ||||||||||||||||| ||||||||||    
T  3211076 tgcataagctgttttgcacaagctaaaaaataagccgatccaaacag 3211122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 21871358 - 21871404
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaacag 47  Q
    ||||||||||||||| ||||| ||||||||||| |||||||||||||    
T  21871358 tgcataagttgttttacataaactaaaaaataaaccaatccaaacag 21871404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 35111410 - 35111454
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||||| ||||||||||||||| |||||| |||||||||||||    
T  35111410 tgcataagctgttttgcataagcttaaaaattagccaatccaaac 35111454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 46
Target Start/End: Complemental strand, 9202351 - 9202308
Alignment:
Q  3 cataagttgttttgcataagctaaaaaataagccaatccaaaca 46  Q
    |||||| | |||| ||||||||||||||||||||||||||||||    
T  9202351 cataagctatttttcataagctaaaaaataagccaatccaaaca 9202308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 6632670 - 6632625
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaaca 46  Q
    |||||||||||||||| |||||||  ||||||||| ||||||||||    
T  6632670 tgcataagttgttttgaataagctctaaaataagctaatccaaaca 6632625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 6805762 - 6805726
Alignment:
Q  13 tttgcataagctaaaaaataagccaatccaaacaggc 49  Q
    |||||||||||||||||| | ||||||||||||||||    
T  6805762 tttgcataagctaaaaaaaatgccaatccaaacaggc 6805726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 10874114 - 10874150
Alignment:
Q  13 tttgcataagctaaaaaataagccaatccaaacaggc 49  Q
    |||||||||||||||||||||| || |||||||||||    
T  10874114 tttgcataagctaaaaaataagtcattccaaacaggc 10874150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 21025300 - 21025332
Alignment:
Q  13 tttgcataagctaaaaaataagccaatccaaac 45  Q
    ||||||||||||||||||| |||||||||||||    
T  21025300 tttgcataagctaaaaaattagccaatccaaac 21025332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 45
Target Start/End: Complemental strand, 25430722 - 25430690
Alignment:
Q  13 tttgcataagctaaaaaataagccaatccaaac 45  Q
    ||||||||||||| |||||||||||||||||||    
T  25430722 tttgcataagctacaaaataagccaatccaaac 25430690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 35590141 - 35590099
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaa 43  Q
    ||||||||||||||| |||||||||||||||||| ||||||||    
T  35590141 tgcataagttgttttacataagctaaaaaataagtcaatccaa 35590099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 391179 - 391135
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||||| |||||||||||| || ||||||||||||||||||||    
T  391179 tgcataagctgttttgcataacctcaaaaataagccaatccaaac 391135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 48819431 - 48819475
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    |||||||| | |||| |||||||||||||||||||||||||||||    
T  48819431 tgcataagctatttttcataagctaaaaaataagccaatccaaac 48819475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 1265771 - 1265814
Alignment:
Q  4 ataagttgttttgcataagctaaaaaataagccaatccaaacag 47  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||    
T  1265771 ataagttgttttgcataagctcaaaaataagtcaattcaaacag 1265814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 28690013 - 28689970
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaa 44  Q
    |||||||| |||| ||||||| ||||||||||||||||||||||    
T  28690013 tgcataagctgttctgcataaactaaaaaataagccaatccaaa 28689970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 26936872 - 26936842
Alignment:
Q  13 tttgcataagctaaaaaataagccaatccaa 43  Q
    |||||||||||||||||||||||||||||||    
T  26936872 tttgcataagctaaaaaataagccaatccaa 26936842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 47413504 - 47413550
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaacag 47  Q
    |||||||| | |||| |||||||| ||||||||||||||||||||||    
T  47413504 tgcataagctatttttcataagctcaaaaataagccaatccaaacag 47413550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 4068115 - 4068082
Alignment:
Q  12 ttttgcataagctaaaaaataagccaatccaaac 45  Q
    ||||||| ||||||||||||||||||||||||||    
T  4068115 ttttgcaaaagctaaaaaataagccaatccaaac 4068082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 49971262 - 49971217
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaaca 46  Q
    ||||||||||||||||||||||||  ||||||||| |||| |||||    
T  49971262 tgcataagttgttttgcataagctctaaaataagctaatctaaaca 49971217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6900643 - 6900691
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaacaggc 49  Q
    ||||||||| ||||||||||| || |||| |||| ||||||||||||||    
T  6900643 tgcataagtcgttttgcataatctcaaaagtaagtcaatccaaacaggc 6900691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28870335 - 28870379
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    |||| ||||| |||| ||||||||||||| |||||||||||||||    
T  28870335 tgcaaaagttatttttcataagctaaaaattaagccaatccaaac 28870379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 35897698 - 35897742
Alignment:
Q  1 tgcataagttgttttgcataagctaaaaaataagccaatccaaac 45  Q
    ||||||||||||||||||||| || ||||||||  ||||||||||    
T  35897698 tgcataagttgttttgcataaccttaaaaataaatcaatccaaac 35897742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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