View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21300_low_5 (Length: 394)
Name: NF21300_low_5
Description: NF21300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21300_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 9e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 208 - 379
Target Start/End: Original strand, 289391 - 289563
Alignment:
| Q |
208 |
taataatgtatagcaagttcaataagacaatatttaggagtacaaataaatatgatgagataaactcaaatgcacaattaatgcagaataaaactgttaa |
307 |
Q |
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| T |
289391 |
taataatgtatagcaagttcaataagacaatatttaggagtacaaataaatatgatgagataaactgaaatgcacaattaatgcagaataaaactgttaa |
289490 |
T |
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| Q |
308 |
ccaaccattatatttc-ttaagaaaccaaccatcaagttaggaaacaacaattcacaaccaaccgatattttt |
379 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
289491 |
ccaaccattatatttctttaagaaaccaaccatcaagttaggaaacaacaattcacaaccaaccgatattttt |
289563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 289184 - 289287
Alignment:
| Q |
1 |
tgtaatgacaatgatggcatggctttgcttataaaatatttcattctgattagttgggaccggtagcgggtttaaatccattaaaatgcaacgacatgat |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||| | |
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| T |
289184 |
tgtaatgacaataatggcatggctttgcttataaaatatttcattctgattagttgggagcagtgacgggtttaaatccattaaaatgcaacgacatggt |
289283 |
T |
|
| Q |
101 |
attg |
104 |
Q |
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|||| |
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| T |
289284 |
attg |
289287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 211 - 379
Target Start/End: Original strand, 24531129 - 24531298
Alignment:
| Q |
211 |
taatgtatagcaagttcaataagacaatatttaggagtacaaata-aatatgatgagataaactcaaatgcacaattaatgcagaataaaactgttaacc |
309 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| | |||||||||||||||||||||||||||||||| |
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| T |
24531129 |
taatgtatagaaagttcaataggacaatatttaggagtacaaatataatatgatgagctaaactctagtgcacaattaatgcagaataaaactgttaacc |
24531228 |
T |
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| Q |
310 |
aaccattatatttcttaagaaaccaaccatcaagttaggaaacaacaattcacaaccaaccgatattttt |
379 |
Q |
| |
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|||||||| |||| ||| ||||||||||||| ||||| |||| |||||||||| |||||| |||||||| |
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| T |
24531229 |
aaccattaaattttttacaaaaccaaccatcatgttagaaaacgacaattcacagccaaccaatattttt |
24531298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 211 - 379
Target Start/End: Original strand, 24523704 - 24523873
Alignment:
| Q |
211 |
taatgtatagcaagttcaataagacaatatttaggagtacaaata-aatatgatgagataaactcaaatgcacaattaatgcagaataaaactgttaacc |
309 |
Q |
| |
|
|||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||| | |||||| ||||||||||||||||||||||||| |
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| T |
24523704 |
taatgtatagaaagggcaataggacaatatttaggagtacaaatataatatgatgagctaaactctagtgcacagttaatgcagaataaaactgttaacc |
24523803 |
T |
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| Q |
310 |
aaccattatatttcttaagaaaccaaccatcaagttaggaaacaacaattcacaaccaaccgatattttt |
379 |
Q |
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||| |||| |||| ||| ||||||||||||| ||||| |||| ||||||||||||||||| |||||||| |
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| T |
24523804 |
aactattaaattttttacaaaaccaaccatcatgttagaaaacgacaattcacaaccaaccaatattttt |
24523873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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